User: sjohn

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sjohn20
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Posts by sjohn

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Comment: C: Compare allele frequencies between populations
... Hi Santosh Thank you for your comment. If I were to rephrase my original question, it would be "What is the best statistic to determine if allele frequencies are significantly different between 2 populations?[same question in RG here][1]" I read about doing a Fischer's exact test or chi-squared te ...
written 2.4 years ago by sjohn20
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Comment: C: Compare allele frequencies between populations
... Thank you the suggestion. Any idea how I can do a p-value calculation between my population's allele frequencies and the global allele frequencies? Thanks ...
written 2.4 years ago by sjohn20
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Compare allele frequencies between populations
... Hi, I want to compare the Minor allele frequencies for a list of SNPs from my population with that of 1000 genomes all individuals MAF values. My aim is to get an appropriate p-value statistic to get variants having significant allele frequencies. How do I get started? Many thanks in advance. ...
allele frequency snp written 2.4 years ago by sjohn20 • updated 2.4 years ago by Santosh Anand4.9k
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Comment: C: Out Of Disk Space With Picard Tools ?
... that solved the no-space issue, but now I am getting this: Exception in thread "main" net.sf.samtools.util.RuntimeIOException: java.io.FileNotFoundException: /Picard/picard-tools-1.72/pwd/tmp/sortingcollection.4875296484959495534.tmp (Too many open files) Anyone had similar issue? ...
written 7.1 years ago by sjohn20
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(Closed) Has Anyone Used The Ngs Tool Bamstats?
... Has anyone used BAMStats for their NGS data? ...
written 7.3 years ago by sjohn20 • updated 6.3 years ago by Biostar ♦♦ 20

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Popular Question 3.9 years ago, created a question with more than 1,000 views. For Has Anyone Used The Ngs Tool Bamstats?

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