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Showing :
questions
0
votes
4
replies
1.1k
views
Convert phased vcf to Chromosome/scaffold + Tag Haplotype Matrix
vcf
phased
haplotypes
shapeit
bcftools
3.0 years ago by
QPaps04
▴ 140
0
votes
0
replies
1.8k
views
Filter max-missing multiple time removes more SNPs
SNP
filtering
vcftools
linux
sequencing
3.4 years ago by
QPaps04
▴ 140
1
vote
3
replies
3.4k
views
Alternative to PGDSpider for vcf conversion
vcf
SNP
next-gen
conversion
memory
updated 3.6 years ago by
Francisco Pina Martins
• 0 • written 4.0 years ago by
QPaps04
▴ 140
0
votes
0
replies
827
views
Deeptools plotCoverage and bamPEFragmentSize change axes
Deeptools
coverage
sequencing
snp
next-gen
3.6 years ago by
QPaps04
▴ 140
8
votes
2
replies
2.7k
views
remove listed singletons from vcftools output
vcftools
sequencing
genome
next-gen
updated 10 months ago by
Paige Joy
• 0 • written 4.0 years ago by
QPaps04
▴ 140
0
votes
3
replies
1.1k
views
Filter SNPs for DP using mean + 2*SD
SNP
next-gen
Filter
depth
vcftools
4.0 years ago by
QPaps04
▴ 140
0
votes
3
replies
1.2k
views
Filter SNPs in multiple-sample vcf based on the snps of two samples
vcf
SNP
filter
bash
linux
4.3 years ago by
QPaps04
▴ 140
7 results • Page
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