User: rehab1171

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rehab11710
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Posts by rehab1171

<prev • 6 results • page 1 of 1 • next >
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Comment: C: After trimming, how to proceed with the published tutorial of 16S analysis
... Which manual, can you please post it? I read the tutorial for the 16S workflow, and it does not include trimming before building contigs. I read the Quality control tutorial and it does not include how to proceed after trimming. ...
written 22 days ago by rehab11710
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Answer: A: After trimming, how to proceed with the published tutorial of 16S analysis
... Which manual, can you please post it? I read the tutorial for the 16S workflow, and it does not include trimming before building contigs. I read the Quality control tutorial and it does not include how to proceed after trimming. ...
written 22 days ago by rehab11710
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Answer: A: How to analyse single reads (not paired-end) for 16S diversity study
... Thank you Leon for taking the time to answer. I understand that there is no direct way on Galaxy to run single reads, correct? One has to run other programs (the links you provided). I know, I am asking very basic questions, my apology, one is always a beginner when is running thing first time :) Th ...
written 22 days ago by rehab11710
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After trimming, how to proceed with the published tutorial of 16S analysis
... I have trimmed all my reads. Now I wanted to continue with the tutorial file:///C:/Users/RehabElshehawy/Zotero/storage/Y9IA5GLM/tutorial.html I need to create: a collection of dataset reads. 1) I tried, It didn't work cause the names of the files were changed by mothur during trimming, hence they no ...
assembly written 22 days ago by rehab11710
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How to analyse single reads (not paired-end) for 16S diversity study
... I am very new (first time) user of Galaxy. I am trying to analyze Illumina Fastq files for 16S diversity study. Unfortunately, my data quality is bad so I can not create contigs from forward and reverse reads (I did 2x300 bp, the last 150 from each read has a low quality, on generating a contigs I ...
sequence written 23 days ago by rehab11710
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Comment: A: Analyzing only forward reads in mothur
... Hello guys, I am new to Galaxy and I have the same problem. I tried what is said above. fastaq.info created 5 files but all were empty (0bytes). So I tried the following (all using galaxy): 1) Concatenate fastaq files (to create one single fastaq file of my 7 fasta qfiles) 2) converted my concatena ...
written 23 days ago by rehab11710

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