User: donglei.hu

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donglei.hu10
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Posts by donglei.hu

<prev • 7 results • page 1 of 1 • next >
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Comment: C: CNVkit bam file
... The document didn't mention this. I am sure CNVkit works without recalibration. I am just wondering if people usually do recalibration before running CNVkit. ...
written 12 days ago by donglei.hu10
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Answer: A: CNVkit installation problem
... I just copied a bunch of cnvkit files from ~/anaconda3/bin to ~/bin and then it worked. ...
written 12 days ago by donglei.hu10
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CNVkit bam file
... I am using CNVkit to generate CNV calls. My question is, is it better to use base quality score re-calibrated bam file than original bam file? ...
sequencing written 12 days ago by donglei.hu10
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Comment: A: CNVkit installation problem
... Thank you all for your helpful replies. I think I figured out what the problem is and CNVkit is now running well. ...
written 12 days ago by donglei.hu10
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Comment: C: CNVkit installation problem
... Didn't seem to. Should there be a directory "cnvkit"? I can remove the directory "anaconda3" and re-install it if that's necessary. ...
written 18 days ago by donglei.hu10
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Comment: C: CNVkit installation problem
... ``` which cnvkit.py /usr/bin/which: no cnvkit.py in (/netapp/home/dhu/bin:/netopt/ucsf/ihg/bin:/netopt/ucsf/ihg/bin64:/opt/sge/bin:/opt/sge/bin/lx-amd64:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin) ``` ``` cnvkit.py -h -bash: cnvkit.py: command not found ``` ...
written 18 days ago by donglei.hu10
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CNVkit installation problem
... Hi, I am new to cnvkit so apologize if this issue has been discussed before. I have followed the instruction to install cnvkit using anacoda 3. I have also run configuration with ``` conda config --add channels defaults conda config --add channels bioconda conda config --add channels conda-forge ` ...
software error written 18 days ago by donglei.hu10 • updated 11 days ago by constharper0

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Scholar 12 days ago, created an answer that has been accepted. For A: CNVkit installation problem

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