User: Hwaterma

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Hwaterma0
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Posts by Hwaterma

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readTranscriptFeatures from genomation
... I have a GFF3 file that I turned into a Bed12 file. It load into R and works fine: featurefile <- readBed("geneannotation.bed") Parsed with column specification: cols( X1 = colcharacter(),X2 = coldouble(), X3 = coldouble(), X4 = colcharacter(), X5 = coldouble(), X6 = colcharacter(), X7 ...
software error R genomation readtranscriptfeatures written 7 months ago by Hwaterma0 • updated 6 weeks ago by thymesand0
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Comment: C: JBrowse help with opening a Gff gene model file
... I am on the online JBrowse and I click on Track. That opens a pull down menu. Then I click on open track file or URL. The it make a track for me but says the error instead of my info. ...
written 12 months ago by Hwaterma0
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Comment: C: JBrowse help with opening a Gff gene model file
... Here is the top of my GFF file: ##gff-version 3 utg002023l_pilon . contig 1 648515 . . . ID=utg002023l_pilon;Name=utg002023l_pilon utg002023l_pilon maker gene 52467 53191 . + . ID=maker-utg002023l_pilon-exonerate_protein2genome-gene-0.1;Name=maker-utg002023l_pilon-exonerate_protein2geno ...
written 13 months ago by Hwaterma0 • updated 12 months ago by ATpoint36k
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JBrowse help with opening a Gff gene model file
... I am trying to look at my gene model on JBrowse and keep getting "an error was encountered when displaying this track. Diagnostic message: [object ProgressEvent]". I can't seem to find what it mean anywhere. Can someone please help? ...
jbrowse written 13 months ago by Hwaterma0 • updated 12 months ago by Biostar ♦♦ 20

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