User: smyiz

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smyiz0
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Posts by smyiz

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uncentered Pearson correlation
... I have a big dataset (20 columns and 1000 rows) and I would need to find uncentered Pearson correlation between 2 columns of it to draw dendrogram in R. I found the correlation definition as: (sum(x) * sum(y)) / sqrt(sum (x^2) * sum (y^2)) I am confused, Should I write this for ...
R written 2 days ago by smyiz0
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how to normalize row counts before drawing heatmap?
... I have raw counts and edgeR differential expression results and want to draw a heatmap with logFC value. I have 12 groups, two cell lines with triplicate total and IP. (cell1T1, cell1T2, cell1T3, cell1IP1, cell1IP2, cell1IP3, cell2T1, cell2T2, cell2T3, cell2IP1, cell2IP2, cell2IP3) I want ...
R rna-seq heatmap written 11 days ago by smyiz0

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