User: AngAdd

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AngAdd0
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Posts by AngAdd

<prev • 4 results • page 1 of 1 • next >
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Comment: C: edgeR FDR always 1
... Yes, my samples are in this order: normal, normal, normal, cancer, cancer, cancer. Thank you so much! ...
written 2 days ago by AngAdd0
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edgeR FDR always 1
... Hi everyone, I'm doing the differential expression analysis of miRNAs by using edgeR. I have 3 normal samples and 3 cancer samples. At the end I have this result, where FDR are always 1. Am I doing something wrong? (I'm new in bioinformatics..) mydata <- read.table("provaR.txt",h ...
fdr differentialexpression edger mirna written 3 days ago by AngAdd0 • updated 3 days ago by swbarnes25.8k
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Comment: C: miRna-Seq, featureCounts problem
... Hi, thank you for your answer! I tried to run your command line but I had this error message: > samtools idxstats: fail to load index for "my_path/hsa.gff3" Then I tried to run this: > samtools index 4T_mapped.sorted.bam > samtools idxstats my_path/4T_mapped.sorted.bam and I have ob ...
written 5 days ago by AngAdd0
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miRna-Seq, featureCounts problem
... Hi everyone! I'm new to Bioinformatics. I need to write a pipeline for miRNA-Seq. The situation is the following: I have three normal samples and three cancer samples. I downloaded the stem-loop and the mature human sequences from miRBase, then I performed the mapping using Bowtie. Now I need to o ...
mirbase featurecounts mirna written 5 days ago by AngAdd0 • updated 5 days ago by Buffo1.6k

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