User: mayankkaashyap

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Posts by mayankkaashyap

<prev • 8 results • page 1 of 1 • next >
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Comment: A: Longest Isoform using CAFE
... [All CAFE commands.txt][1] [Tutorial files][2] I am referring this! [1]: https://iu.app.box.com/v/cafetutorial-files/file/150460955615 [2]: https://iu.app.box.com/v/cafetutorial-files ...
written 8 months ago by mayankkaashyap30
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Comment: A: Longest Isoform using CAFE
... Hi Genomax, thanks for response. Here it is: [CAFE][1] [1]: https://github.com/hahnlab/CAFE ...
written 8 months ago by mayankkaashyap30 • updated 8 months ago by RamRS28k
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Comment: A: Prepare gene families for CAFE
... Hi, I am using CAFE to isolate longest isoform for each gene (the first step in pipeline). Can anyone tell how long this step takes mine has been running for days with no output! Installation and file formats are all correct!! Thanks! ...
written 8 months ago by mayankkaashyap30
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Comment: C: PCA plot from read count matrix from RNA-Seq
... Hi Kevin, Thanks so much! Don't have word to thank you! ...
written 14 months ago by mayankkaashyap30
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Comment: C: PCA plot from read count matrix from RNA-Seq
... Solyc00g005000 Solyc00g005040 Solyc00g005050 Solyc00g005060 Solyc00g005080 Solyc00g005090 Leaf1 0.00000000 2.97000000 18.58000 0 0.00000000 0 Leaf2 0.00000000 0.00000000 20.83000 0 0.00000000 0 Leaf3 ...
written 14 months ago by mayankkaashyap30
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Comment: C: PCA plot from read count matrix from RNA-Seq
... Hi Kevin, Thanks so much for you kind help! I installed and types following: > trying URL > 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.5/xtable_1.8-4.tgz' > Content type 'application/x-gzip' length 699599 bytes (683 KB) > ================================================== ...
written 14 months ago by mayankkaashyap30
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Comment: C: PCA plot from read count matrix from RNA-Seq
... Hi Kevin, Thanks for your reply. I can't install PCAtools in R: it download yet when I open the package it says not found. I have 46 colums with Leaf and fruit samples and rows are genes. I don't know how to plot PCA and color Leaf and fruit. Is there a simple example I can understand with. Sorry I ...
written 14 months ago by mayankkaashyap30
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Comment: A: PCA plot from read count matrix from RNA-Seq
... Hi Kevin, Thanks! Can you please tell me how can I color two groups, one in green and other in red? ...
written 14 months ago by mayankkaashyap30

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