User: endretoth

gravatar for endretoth
endretoth20
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3 weeks, 6 days ago
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11 months, 1 week ago
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e********@hotmail.com

I'm curious and eager to learn all aspects of bioinformatics. ;)

Posts by endretoth

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Filter fasta sequences based on a list with grep or BBmap
... These are microRNAs, only "few" bases and less than a line. :) (PS: Why I never get votes? Can you explain how this works?) ...
written 4 weeks ago by endretoth20
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Answer: A: Filter fasta sequences based on a list with grep or BBmap
... Dear All ( lieven.sterck, nlehmann, genomax), While I was waiting (I didn' see the last posts) I tried the following code: grep -F -f names2.txt -A 1 mature2.fa > filtered_new.fa This worked perfectly. (I only changed the names to be more specific): cre- cln- pab- pde- ...
written 4 weeks ago by endretoth20
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Comment: C: Filter fasta sequences based on a list with BBmap
... Dear lieven.sterck, The original command does not require '-', please look: Usage: filterbyname.sh in= in2= out= out2= names= include= I tried also with substring=name, but unfortunately, it doesn't change the outcome. ...
written 4 weeks ago by endretoth20
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Filter fasta sequences based on a list with grep or BBmap
... Hi, I would like to filter sequences (in command line Unix) with grep or BBmap based on a list of names stored in a separate file. The list has the names but not the full names, just part of the full sequence name. The name list looks like: cre cln pab pde pta ppt smo ...
fasta sequence bbmap unix linux written 4 weeks ago by endretoth20
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Comment: C: ggplot second y-axis: how to specify a secondary axis if I don't want to scale m
... Dear Hasani & Ido, I could create the plot based on the forum that Hasani suggested. However, I cannot add error bars (lkmin and max). I have tried several ways. Please help me this is the last step. This is my script: ylim.deltak <- c(0, 30) # deltak ylim.lkmean <- c(-10000, ...
written 5 months ago by endretoth20
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Comment: C: ggplot second y-axis: how to specify a secondary axis if I don't want to scale m
... Hi Hasani, I'm suffering with this R script. I don't clearly understand what is this `~.*10` means. My I ask for some help? p <- ggplot(test.data, aes(x = k))+ geom_line(aes(y = lkmean, colour="#606060"))+ geom_line(aes(y = deltak, colour="#303030"))+ scale_y_continuous(se ...
written 5 months ago by endretoth20
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Comment: C: ggplot second y-axis: how to specify a secondary axis if I don't want to scale m
... Hi Ido, This is exactly what I mentioned, this is a solution when you need to scale your data. If you look at the example this requires to use the scale_y_continous argument: p + scale_y_continuous(sec.axis = sec_axis(~ . + 10)) I would like to create the plot without scaling. Therefore this is n ...
written 5 months ago by endretoth20
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ggplot second y-axis: how to specify a secondary axis if I don't want to scale my second y variable
... Hi All, I'm a beginner with ggplot and I have a simple but specific problem. Unfortunately, I cannot find a simple solution on any website. May I kindly ask for your help? I would like to create a ggplot line plot with two y axis, with one y on the left side and one y on the right side. However, ...
R ggplot structure written 5 months ago by endretoth20
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Answer: A: Cannot execute command-line STRUCTURE software on a Linux machine
... Dear All, I would like to write to all person helped to solve this problem (Joe, genomax, WouterDeCoster, h.mon). Sorry, for my slow response, unfortunately, the Biostars forum does not allow me to write more than 5 messages within 6 hours, or something like this, as a new users.) The problem is s ...
written 6 months ago by endretoth20
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Comment: C: Cannot execute command-line STRUCTURE software on a Linux machine
... Yes it is the following: xxx:~/structure/Psylvestris/oldSTR/console$ ls -l total 1044 -rwxr-xr-x 1 tendre tendre 6260 nov 20 12:59 extraparams -rwx------ 1 tendre tendre 96029 nov 20 12:44 input_oldStr -rwxr-xr-x 1 tendre tendre 2590 nov 20 12:56 m ...
written 6 months ago by endretoth20 • updated 6 months ago by Joe16k

Latest awards to endretoth

Scholar 4 weeks ago, created an answer that has been accepted. For A: Cannot execute command-line STRUCTURE software on a Linux machine
Teacher 6 months ago, created an answer with at least 3 up-votes. For A: Cannot execute command-line STRUCTURE software on a Linux machine
Scholar 6 months ago, created an answer that has been accepted. For A: Cannot execute command-line STRUCTURE software on a Linux machine

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