User: jahanshanzida

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Posts by jahanshanzida

<prev • 12 results • page 1 of 2 • next >
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Comment: C: Trainning on NGS
... Hi Smyth, Thank you so much for the provided link. Shanzida. ...
written 9 days ago by jahanshanzida0
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Comment: C: Trainning on NGS
... Hi Leite, Thank you so much for the information. ...
written 9 days ago by jahanshanzida0
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Trainning on NGS
... Hi all, I am a graduate student in Bioinformatics. I am very interested to learn and get some hands-on experience in NGS. I am a novice in this field. Please provide me with some materials(any video link, pdf book or web link, git hub link ) so that I can learn NGS data analysis. Shanzida. ...
next-gen written 10 days ago by jahanshanzida0 • updated 9 days ago by Leite890
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Comment: A: Mapping of novel peptide
... Yes, this is a follow-up question.I have got two peptide by PGA bioconductor in R.These are : VFLLPLCKSS PPLLDQDQIV LLRGWFLSTW NLKCPTSNHS LEFNGTLLCP LVEAFSLWKP RPLSLQN chr1:87627704-87627922_+::::LINC01140|-|F3|1 I have then collected nucleotide sequence from USCS genome browser ...
written 4 months ago by jahanshanzida0 • updated 4 months ago by RamRS24k
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Mapping of novel peptide
... Dear All, I have got a couple of novel peptides by using PGA of R Bioconductor package. Now I want to map these novel peptides into genomic context. By using which bioinformatics tool I can map my novel peptides into New TIS, novel exon, a novel gene, novel splicing, UTR translation. Thank you. ...
genome written 4 months ago by jahanshanzida0
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Comment: C: Match peptides to protein sequences and tell the position in R
... Thank you so much for your answer. ...
written 4 months ago by jahanshanzida0
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Comment: C: Novel peptide identification
... Thank you so much for the reply and consideration of my problem. ...
written 4 months ago by jahanshanzida0
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Comment: C: Novel peptide identification
... Dear manuel.belmadani, Thank you so much for your elaborate explanation. You were right . My peptides are very short . Your suggestions are very helpful. I hope will get some fruitful outcome by following these. Thanks for your time. Shanzida ...
written 4 months ago by jahanshanzida0
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Comment: C: PRIDE Mass-Spec Published data analysis?
... Hello, I have peptide 30,000 peptide sequences from human brain sample. I want to compare these peptides with the PRIDE database peptide sequence to see whether my peptide sequence is novel or not. I am facing two problems. Firstly, I have to download the pride dataset in Linux server because my c ...
written 4 months ago by jahanshanzida0
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Comment: C: Novel peptide identification
... Thank you so much for your reply. The length of my peptide sequences is 30,000, and it is very difficult to do these at the same time. I also tried to do a search by splitting but that also increases the rate of mistakes. That's why I tried to download peptide dataset in the Linux server and then co ...
written 4 months ago by jahanshanzida0

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