User: jahanshanzida

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Posts by jahanshanzida

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Need some resources for High Throughput data analysis
... Thanks for the reply. I actually want to know how I can perform data cleaning and data normalization in R/Bioconductor during RNA seq or Chip seq data analysis? I did RNA seq data analysis by following a workflow but those were not included any code or any steps about data cleaning? It would be grea ...
written 9 months ago by jahanshanzida0
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Comment: A: Need some resources for High Throughput data analysis
... Sorry for the elaborate question. Actually I am going to apply in a Bioinformatics Analyst I post and they want a person who has a deep understanding of and some experience in processing high throughput biomedical data: data cleaning, normalization. I am just graduated in Bioinformatics and have s ...
written 9 months ago by jahanshanzida0
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Need some resources for High Throughput data analysis
... Hi all, would you please give me some resources or idea that how I can carry out data cleaning, normalization, analysis high throughput biomedical data in R. and what are the bioinformatics tools I can use for Next Generation Sequencing (NGS)? I am a novice in this field. Please provide me with s ...
R next-gen written 9 months ago by jahanshanzida0
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Comment: C: Trainning on NGS
... Hi Smyth, Thank you so much for the provided link. Shanzida. ...
written 10 months ago by jahanshanzida0
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Comment: C: Trainning on NGS
... Hi Leite, Thank you so much for the information. ...
written 10 months ago by jahanshanzida0
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Trainning on NGS
... Hi all, I am a graduate student in Bioinformatics. I am very interested to learn and get some hands-on experience in NGS. I am a novice in this field. Please provide me with some materials(any video link, pdf book or web link, git hub link ) so that I can learn NGS data analysis. Shanzida. ...
next-gen written 10 months ago by jahanshanzida0 • updated 10 months ago by Leite1.1k
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Comment: A: Mapping of novel peptide
... Yes, this is a follow-up question.I have got two peptide by PGA bioconductor in R.These are : VFLLPLCKSS PPLLDQDQIV LLRGWFLSTW NLKCPTSNHS LEFNGTLLCP LVEAFSLWKP RPLSLQN chr1:87627704-87627922_+::::LINC01140|-|F3|1 I have then collected nucleotide sequence from USCS genome browser ...
written 14 months ago by jahanshanzida0 • updated 14 months ago by RamRS30k
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Mapping of novel peptide
... Dear All, I have got a couple of novel peptides by using PGA of R Bioconductor package. Now I want to map these novel peptides into genomic context. By using which bioinformatics tool I can map my novel peptides into New TIS, novel exon, a novel gene, novel splicing, UTR translation. Thank you. ...
genome written 14 months ago by jahanshanzida0
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Comment: C: Match peptides to protein sequences and tell the position in R
... Thank you so much for your answer. ...
written 14 months ago by jahanshanzida0
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Comment: C: Novel peptide identification
... Thank you so much for the reply and consideration of my problem. ...
written 15 months ago by jahanshanzida0

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