User: xiaoguang
xiaoguang • 10
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- 1 month, 2 weeks ago
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Posts by xiaoguang
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... How to get an exact match from the bam comparison file, it is well known that M in the cigar character is completely consistent or there is mismatch, but how do I get a completely consistent sequence? ...
written 4 weeks ago by
xiaoguang • 10
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... If we use featurecount, we can get gens quantification beacuse of aligning sequences to genome, but we use Salmon, we only get isoforms quantification.
however,TPM is the percentage of FPKM,Are they different？ ...
written 5 weeks ago by
xiaoguang • 10
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... Is there any R packages or programs could help me to calculate **effective length** of every isoform or gene?
We know the importance of effective length when we calculate TPM for isoforms or genes . but we can not got it from featurecount program. Salmon can get it ,but it is only for ...
written 5 weeks ago by
xiaoguang • 10
• updated
6 days ago by
Gordon Smyth • 950
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... Thank you very much, I know what's wrong with me. I have not installed proj.4. ...
written 5 weeks ago by
xiaoguang • 10
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... When I install R package "sf", I always meet this error:
> configure: error: proj_api.h not found in standard or given locations."
Actually, I have "proj_api.h" in my miniconda3 includ dir and "proj_api.so"in lib dir, but it continue give me an error? ...
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... We can use edgeR to normalized raw read counts with TMM method, but how can we normalized TPM with the same method? ...
written 6 weeks ago by
xiaoguang • 10
• updated
8 days ago by
Gordon Smyth • 950
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