User: hauken_heyken

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Posts by hauken_heyken

<prev • 6 results • page 1 of 1 • next >
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Answer: A: Calculate Ribosome Binding Score for ORFs?
... Here: Python standalone implementation of RBS calculator. https://github.com/hsalis/Ribosome-Binding-Site-Calculator-v1.0 ...
written 11 months ago by hauken_heyken40
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Answer: A: Calculate Ribosome Binding Score for ORFs?
... If I understand then, you want to "Predict a mRNA's Translation Initiation Rate in Bacteria" Go here and see if this is what you want ? https://salislab.net/software/predict_rbs_calculator It would per gene, predict a RBS score (the translation initation rate) Let me know if this is not what yo ...
written 11 months ago by hauken_heyken40
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Answer: A: Is there any tools to predict all possible uORFs in an organisms?
... If you use R, this one is good: https://rdrr.io/github/JokingHero/ORFik/man/findUORFs.html ...
written 11 months ago by hauken_heyken40
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Answer: A: Calculate Ribosome Binding Score for ORFs?
... When you say RBS score, do you mean procaryote ribosome binding sites calculator using free energy like this, but local version of it ? https://salislab.net/software/predict_rbs_calculator Or eukaryote Kozak score, as implemented in ORFik ? https://rdrr.io/bioc/ORFik/man/kozakSequenceScore.html Or ...
written 11 months ago by hauken_heyken40
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Answer: A: Best command line ORF finder
... The R package [ORFik][1] in Bioconductor has all you need, implemented in C++ and even takes circular genomes. [1]: https://www.bioconductor.org/packages/devel/bioc/html/ORFik.html ...
written 13 months ago by hauken_heyken40
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Answer: A: R functions that extract the ORF from a sequence
... The R package [ORFik][1] in Bioconductor has all you need, implemented in C++ and even takes circular genomes. [1]: https://bioconductor.org/packages/devel/bioc/html/ORFik.html ...
written 13 months ago by hauken_heyken40

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