User: miquelduranfrigola

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760
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Barcelona
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4 years, 10 months ago
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7 years, 1 month ago
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Posts by miquelduranfrigola

<prev • 77 results • page 1 of 8 • next >
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Protein sequence from EC number and species
... Hi all, from BRENDA database I got a list of ~20,000 pairs of (EC number, Organism) that are of my interest. I need the protein sequence corresponding to each of these enzymes. In principle, BRENDA provides protein sequences (you can fetch them through the SOAP server), although the coverage is pre ...
sequence ec brenda written 5.0 years ago by miquelduranfrigola760 • updated 5.0 years ago by Brett150
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Get SMILES strings from all compounds with bioactivity data in PubChem
... Hi all, I need the full list of CIDs (and corresponding SMILES string) of compounds that have been screened in BioActivity assays in PubChem. What is the easiest way to obtain it? Thanks! ...
pubchem written 5.2 years ago by miquelduranfrigola760 • updated 5.2 years ago by David Westergaard1.4k
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Answer: A: protein 3-D structure prediction
... Modeller is a quite common tool for homology modeling. Swiss-Model should be fine, also. And check ModBase or Interactome3D. Regarding visualization, pymol is a great tool.   ...
written 5.4 years ago by miquelduranfrigola760
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Command-line sequence feature extraction tool
... Hi all, I am looking for a command-line tool to extract varied sequence features, similar to what it is done by ProFeat (amino acid composition, dipeptide composition, and a long etcetera).  Are you aware of any tool that can be useful to me? Thanks in advance. ...
sequence written 5.4 years ago by miquelduranfrigola760 • updated 5.4 years ago by Zag10
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Answer: A: Drug information databases
... If I want to know something about a drug, first place I go to is DrugBank. ...
written 5.4 years ago by miquelduranfrigola760
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Answer: A: International Internships
... FEBS and EMBO short-term fellowships are good options for 4th-year PhD students. ...
written 5.4 years ago by miquelduranfrigola760
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Predict effect of pH on enzymatic activity
... Hi all, I was wondering... given the 3D structure of an enzyme, is it possible to predict the effect of pH on its catalytic activity? Are there user-friendly tools that allow me to do so? Thanks! ...
ph written 5.4 years ago by miquelduranfrigola760 • updated 2.9 years ago by Biostar ♦♦ 20
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Identify enzymes among a list of Uniprot ACs
... Hi all, I have a list of human Uniprot ACs and I would like to identify all enzymes among them. How would you do this? Thanks, Miquel ...
uniprot enzyme written 5.4 years ago by miquelduranfrigola760
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Active Site Of Enzymes
... Hi all, I have a list of UniprotACs corresponding to enzymes (no structure available for most of them). I'd like to identify residues in the active site. For now, I am looking at InterPro and extracting regions with the tag "site". Is this good practice? Any better option? Many thanks in advance, ...
written 5.5 years ago by miquelduranfrigola760 • updated 5.5 years ago by Neilfws48k
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Nci Pathway Interaction Database Or Kegg?
... Hi all, I need a collection of human pathways. I have seen that NCI PahtwayInteractionDatabase integrates BioCarta, Reactome and Nature-Curated pathways. It looks like a good resource, but I've never used it and I'm not sure it is comprehensive. On the other hand, I know KEGG (and its drawbacks) q ...
kegg written 5.6 years ago by miquelduranfrigola760

Latest awards to miquelduranfrigola

Popular Question 5.3 years ago, created a question with more than 1,000 views. For Bioinformatics Freelance, Part-Time Jobs
Student 5.4 years ago, asked a question with at least 3 up-votes. For Mrbayes Consensus Tree For A Partially Intrinsically Disordered Protein
Voter 5.4 years ago, voted more than 100 times.
Supporter 5.4 years ago, voted at least 25 times.
Student 7.0 years ago, asked a question with at least 3 up-votes. For Mrbayes Consensus Tree For A Partially Intrinsically Disordered Protein
Teacher 7.0 years ago, created an answer with at least 3 up-votes. For A: Comparative Network Visualization
Student 7.0 years ago, asked a question with at least 3 up-votes. For Bioinformatics Freelance, Part-Time Jobs
Popular Question 7.0 years ago, created a question with more than 1,000 views. For Bioinformatics Freelance, Part-Time Jobs
Teacher 7.0 years ago, created an answer with at least 3 up-votes. For A: Challenges In Drug Discovery

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