User: Manvitha Reddy

Reputation:
10
Status:
New User
Location:
Delhi, India
Last seen:
1 day, 18 hours ago
Joined:
1 month, 3 weeks ago
Email:
r**************@gmail.com

Senior year undergraduate student in Bioinformatics at Amity University, Noida, India.

My interests lie in Algorithm development and using machine learning techniques to extract insights from various data sets using Python.

Posts by Manvitha Reddy

<prev • 8 results • page 1 of 1 • next >
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Comment: C: How to apply BioPython function to every row of CSV
... The question that was asked just mentioned that the output needs to be printed in the given format but mentioned nothing about storing those scores. Hence I suggested that solution. ...
written 4 weeks ago by Manvitha Reddy10
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Comment: C: how to extract HETATM structures from pdb with python
... Yes, what you say is absolutely true, but if the extension used is **.pdb** then the output file will remain in the PDB format itself and you can even load it into visualization tools to test. I usually use this method to work with the PDB files. ...
written 4 weeks ago by Manvitha Reddy10
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Answer: A: How to apply BioPython function to every row of CSV
... Modify your code like this. Rest is well written. import pandas as pd from Bio import pairwise2 from Bio.pairwise2 import format_alignment data = pd.read_csv("../Results/dave.csv") x =data["S1"] y =data["S2"] for i in range(0,len(data)): X=x[i] ...
written 4 weeks ago by Manvitha Reddy10
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Answer: A: how to extract HETATM structures from pdb with python
... > "I would like to make new files of pdb format which only contain HETATM information" For this, you actually don't need to use Biopython as such. You can achieve this by just using file handling. Code will be as follows: > with open("input_filename.pdb", "r") as inputFile,open("output_ ...
written 4 weeks ago by Manvitha Reddy10
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Comment: C: Error during parsing PDB using Biopython.
... ATOM 1 N MET 1 4.672 7.838 34.130 1.00 0.00 PROA ATOM 2 CA MET 1 5.235 9.161 34.540 1.00 0.00 PROA ATOM 3 CB MET 1 6.146 8.997 35.790 1.00 1.00 PROA ATOM 4 CG MET 1 7.248 7.908 35.71 ...
written 4 weeks ago by Manvitha Reddy10 • updated 4 weeks ago by RamRS24k
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Error during parsing PDB using Biopython.
... parser.get_structure() doesn't return any structure for **some** self-generated PDB files. It does work for some file but not all of them. I have checked several websites for the solution but couldn't find any. def getModel(pdb_filename): pdb_code = "pdb" print(pdb_code,pdb_file ...
pdb biopython written 5 weeks ago by Manvitha Reddy10 • updated 5 weeks ago by Joe14k
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Answer: A: PhD student in Computer Science and Bioinformatics (R1)
... **Do you accept undergraduate students from B.Tech.(B.E.) Bioinformatics for direct admissions into PhD.?** My Profile: B.Tech Bioinformatics - (2020 May pass out) Current CGPA (as of 6th Semester) - 8.59 One conference paper in ICCM - springer Currently working on a project related to CADD and cell ...
written 7 weeks ago by Manvitha Reddy10
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Masters in Bioinformatics
... Hello everyone, I am currently pursuing my **undergraduate degree in bioinformatics in 2020 my current CGPA is 8.59/10 as of 6th semester** from Amity University, India. I would like to further continue my masters in bioinformatics with a research interest in **structural bioinformatics especially c ...

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