User: planetearth

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Posts by planetearth

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Comment: C: Label Clusters in Seurat
... Thanks, but how would I know which cluster is which cell type? Is there a way to find the identity of my clusters? ...
written 7 days ago by planetearth 0
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Label Clusters in Seurat
... I have 2 plots, a control and stimulated group of cells. After clustering, the cluster labels are 0, 1, 2. *EDIT* How can I know what cell types are in each cluster? The known cell type names are in the rows of my data matrix, but how do I search for their names in the cluster? >DimPlot ...
R seurat rna-seq written 7 days ago by planetearth 0 • updated 6 days ago by ApoorvaB230
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Creating an Object
... Hi, I'm having trouble with creating objects for each group. Here's what I've done so far >group1 <- grep("old",rownames(cells@meta.data)) >group2<- grep("young",rownames(cells@meta.data)) >cells[group1] >cells[group2] What should I use for counts? >group1 ...
R written 19 days ago by planetearth 0 • updated 18 days ago by RamRS23k
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Comment: C: Subsetting dataset to create 2 seurat objects
... I think I got it now, thanks! ...
written 19 days ago by planetearth 0

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