User: ajajoo

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ajajoo10
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Posts by ajajoo

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Comment: C: RNA-seq: Explain STAR quantMode geneCounts values
... Can someone please explain point 1. Why is it advised to run htseq-count again if STAR is performing it with quantMode option?thanks ...
written 11 months ago by ajajoo10
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Answer: A: How to install R packages that need dev program like RCurl, png, XML by conda ?
... In my case all these were already installed on linux, so I just changed the order of libraries that appear in PATH i.e. keep conda path at the end in the variable PATH =/*/local/bin:.........:/opt/anaconda3/bin. Just when you are installing the packages in R using install.packages. Once installed PA ...
written 13 months ago by ajajoo10
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find_circ with STAR alignment
... Can I use [find_circ][1] for bam files generated with STAR alignment? I am new to all this and if you can point me to interesting discussions and/or literature that would be great. [1]: https://github.com/marvin-jens/find_circ ...
rna-seq written 13 months ago by ajajoo10 • updated 13 months ago by genomax89k

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