User: jennifer.bridge8

Reputation:
0
Status:
New User
Last seen:
3 days, 12 hours ago
Joined:
1 year ago
Email:
j***************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by jennifer.bridge8

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
120
views
0
answers
Comment: C: Conserved markers between clusters (not between stim/exp etc)
... Where "variable" is the clusters all labelled the same but the cluster is also labelled as a distinct cluster. Eg "seurat_clusters" has 6 clusters and "variable" has 7; I get the same error $ Idents(seurat_object) <- "seurat_clusters" $ conserved.markers <- FindConservedMarkers(seurat_object, ...
written 14 days ago by jennifer.bridge80
0
votes
0
answers
120
views
0
answers
Comment: A: Conserved markers between clusters (not between stim/exp etc)
... Still not having any luck, I subset the cluster for the original ident and then added metadata for the new cluster so that they are A or B then set active ident to the original ident $ conserved.markers <- FindConservedMarkers(cluster4, ident.1 = "4", grouping.var = "AB") and get this error ...
written 14 days ago by jennifer.bridge80 • updated 14 days ago by genomax87k
0
votes
0
answers
120
views
0
answers
Comment: C: Conserved markers between clusters (not between stim/exp etc)
... The FindConservedMarkers function only works with a grouping.var, and by finding the conserved markers within the big cluster doesn't really find what is conversed between the two clusters. ...
written 15 days ago by jennifer.bridge80
0
votes
0
answers
120
views
0
answers
Conserved markers between clusters (not between stim/exp etc)
... Hi Guys, Is there a way to assess/look for conserved markers between two clusters (not between a varying group etc)? Currently, I have identified genes that are both within the DE lists, but I don't really think that captures everything. For background, I have subsetted a small cluster from a lar ...
R seurat conserved markers written 16 days ago by jennifer.bridge80
0
votes
1
answer
995
views
1
answers
Comment: C: How to display TCR data in tsne space via seurat object
... Amazing. Thank you very much!! ...
written 12 months ago by jennifer.bridge80
0
votes
1
answer
995
views
1
answers
Comment: C: How to display TCR data in tsne space via seurat object
... $ FeaturePlot(tcr_testing,feature = c("TRAV13D-1") , pt.size = 0.5) $ Error: None of the requested features were found: TRAV13D-1 in slot data ...
written 12 months ago by jennifer.bridge80
0
votes
1
answer
995
views
1
answers
Comment: C: How to display TCR data in tsne space via seurat object
... I added the VDJ data via add metadata. I attempted a dim plot but can only plot all of them, not just one or two. A feature plot won't work at all. ...
written 12 months ago by jennifer.bridge80
2
votes
1
answer
995
views
1
answer
How to display TCR data in tsne space via seurat object
... Hi Guys, I am trying to work out how I can display by VDJ usage within my tsne plot for some 10x data. I added everything to the Seurat object and tried to do a feature plot to the gene of interest but it can not find them. Do I need to set something as the metadata column name? Cheers, J ...
R seurat written 12 months ago by jennifer.bridge80 • updated 12 months ago by jared.andrews076.4k

Latest awards to jennifer.bridge8

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1386 users visited in the last hour