User: evashan96

gravatar for evashan96
evashan960
Reputation:
0
Status:
New User
Last seen:
9 months, 2 weeks ago
Joined:
11 months, 1 week ago
Email:
e********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by evashan96

<prev • 7 results • page 1 of 1 • next >
1
vote
4
answers
605
views
6 follow
4
answers
sequence length distribution
... how to check sequence length distribution of trimmed reads? (fasta). is there any tool to calculate it? ...
next-gen sequencing written 10 months ago by evashan960 • updated 10 months ago by michael.ante3.6k
0
votes
1
answer
325
views
1
answers
Comment: A: Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly
... cuffdiff -o ./diff_out -b ./genome.fa -p 7 -L c1,c2 -u ./merged.gtf \ ./accepted_hits_S1.bam,./accepted_hits_S2.bam,./accepted_hits_S3.bam ./accepted_hits_S4.bam,./accepted_hits_S5.bam,./accepted_hits_S6.bam,./accepted_hits_S7.bam,./accepted_hits_S8.bam,./accepted_hits_S9.bam,./accepted_hits_S10.bam ...
written 10 months ago by evashan960
0
votes
1
answer
325
views
1
answers
Comment: C: Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly
... cuffdiff -o ./diff_out -b ./genome.fa -p 7 -L c1,c2 -u ./merged.gtf \ ./accepted_hits_S1.bam,./accepted_hits_S2.bam,./accepted_hits_S3.bam ./accepted_hits_S4.bam,./accepted_hits_S5.bam,./accepted_hits_S6.bam,./accepted_hits_S7.bam,./accepted_hits_S8.bam,./accepted_hits_S9.bam,./accepted_hits_S10.bam ...
written 10 months ago by evashan960
1
vote
1
answer
325
views
1
answer
Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly along with the BAM files from TopHat
... hello everyone, I ran cuffdiff using following command: cuffdiff -o ./diff_out -b ./genome.fa -p 7 -L c1,c2 -u ./merged.gtf \ ./accepted_hits_S1.bam,./accepted_hits_S2.bam,./accepted_hits_S3.bam ./accepted_hits_S4.bam,./accepted_hits_S5.bam,./accepted_hits_S6.bam,./accepted_hits_S7.bam ...
next-gen rna-seq written 10 months ago by evashan960 • updated 10 months ago by Benn8.0k
0
votes
1
answer
9.9k
views
1
answers
Comment: C: Cuffdiff Command Line For Labels And Replicates
... It is the GTF file which is merged. ...
written 10 months ago by evashan960
0
votes
0
answers
311
views
0
answers
Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly along with the BAM files from TopHat
... Hi I'm new to RNA-Seq analysis. I ran the following command with cuffdiff: cuffdiff -o /home/silicon/mouse/diff_out -b /home/silicon/mouse/GRCm38/Sequence/Bowtie2Index/genome.fa -p 7 -L g1,g2 -u /home/silicon/mouse/assembly/merged_asm/merged.gtf, \ .//home/silicon/mouse/alignment/Tophat_S2/accepted ...
rna-seq written 11 months ago by evashan960
0
votes
1
answer
9.9k
views
1
answers
Comment: C: Cuffdiff Command Line For Labels And Replicates
... what is this annotation file? ...
written 11 months ago by evashan960

Latest awards to evashan96

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 703 users visited in the last hour