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Posts by evashan96
Cuffdiff - Error in running cuffdiff by using the merged transcriptome assembly along with the BAM files from TopHat
... Hi I'm new to RNA-Seq analysis. I ran the following command with cuffdiff: cuffdiff -o /home/silicon/mouse/diff_out -b /home/silicon/mouse/GRCm38/Sequence/Bowtie2Index/genome.fa -p 7 -L g1,g2 -u /home/silicon/mouse/assembly/merged_asm/merged.gtf, \ .//home/silicon/mouse/alignment/Tophat_S2/accepted ...
... what is this annotation file? ...
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