User: rafael_230987

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Posts by rafael_230987

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Comment: C: Low value of mapped reads against a metagenomic co-assembly
... thanks for the reply, I selected contigs larger than 1000 bp because my goal is to reconstruct Metagenome-assembled genomes (MAG's). Initially I got around 7,000,000 contigs from Megahit but after selecting contigs larger than 1000 bps I only got an final assembly of around 455,000 contigs and I use ...
written 17 days ago by rafael_2309870
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Low value of mapped reads against a metagenomic co-assembly
... Hi, everyone, I have two metagenomic samples, I co-assembled these samples together using both spades and Megahit and then I mapped each sample against the co-assembly using bowtie2. I got for each sample around 40 % overall alignment rate. I would like to know if this low value is normal (given tha ...
assembly next-gen alignment written 17 days ago by rafael_2309870 • updated 17 days ago by biobiu100

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