User: pehenriquejp

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Posts by pehenriquejp

<prev • 11 results • page 1 of 2 • next >
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ModRefiner can not open a PDB file
... Hi everyone I modeled my protein on I TASSER and then tried to refine it on the modrefiner right on the desktop (the web version is unavailable). However, I get the following message: "PDB file can not be opened" (in this case, the protein I just modeled). Has anyone had a similar problem, and if ...
pdb modrefiner standalone package written 6 months ago by pehenriquejp0
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Comment: C: Problem with upload data for Mega
... Sorry Mensur if was not clear enough I downloaded the `.treefile` and `.contree` of IQ Tree and discover that they was already in Newick format but still didn't work, even when I rename them for `.nwk`. Then I tried convert them to another fomarts that mega accepts, like `.fas` or `.meg`, but again ...
written 10 months ago by pehenriquejp0
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Comment: C: Problem with upload data for Mega
... Oh sorry. I didn't noted. I will correct. Thanks ...
written 10 months ago by pehenriquejp0
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Problem inferring ancestor on megax
... Hi everyone I made a phylogenetic tree using IQ Tree and submit her in Newick format to MegaX. With this file I have created another file in `.mtsx` format that can be used for analysis on Mega. When I try use this file in `.mtsx` format for inferring ancestor sequence mega just doesn't show the "A ...
phylogenetic ancestor megax written 10 months ago by pehenriquejp0
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Comment: A: Problem with upload data for Mega
... Sorry Mensur if was not clear enough I downloaded the `.treefile` and `.contree` of IQ Tree and discover that they was already in Newick format but still didn't work, even when I rename them for `.nwk`. Then I tried convert them to another fomarts that mega accepts, like `.fas` or `.meg`, but again ...
written 10 months ago by pehenriquejp0
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Problem with upload data for Mega
... Hi everyone I generate a tree using IQ Tree and from that I want to generate an ancestor sequence (protein) using the Mega software. The problem is that I cant open the output of IQ Tree of any form or format on Mega. I already read about the formats supported by Mega but even when I convert my fil ...
phylogenetics format mega tree written 10 months ago by pehenriquejp0
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Comment: A: Issue with version of makeblastdb during Prokka installation
... I had the same problem. I just changed makeblastdb of bin for another directory to solve the problem. ...
written 15 months ago by pehenriquejp0
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Comment: A: How can I practice genome assembly ? Which softwares I use?
... Sorry for the silly question. I will research more about it. Grateful for the advice. ...
written 15 months ago by pehenriquejp0
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Forum: How can I practice genome assembly ? Which softwares I use?
... I'm started study bioinformatics. I want tests and develop my habilities with some area of bioinformatics, like genome assembly. Best regards! ...
genome assembly beginner forum software written 15 months ago by pehenriquejp0
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Comment: C: How I update makeblastdb
... I modified .bashrc and export PATH using terminal according the command, but version remains 2.6. ...
written 15 months ago by pehenriquejp0

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