User: User 1586

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User 1586280
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Posts by User 1586

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Comment: C: What Is The Quickest Algorithm For Range Overlap?
... Hi, I am curious about how the nested containment list scales with respect to read depth for NGS type data. If you had, say 20X coverage would this be a bad case scenario? Thanks for your thoughts! ...
written 10.3 years ago by User 1586280
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What Is The Quickest Algorithm For Range Overlap?
... A very common bioinformatics query is a range overlap, looking for features/annotations/etc that overlap a certain 'slice' of sequence. There are many different implementations (database like search trees, nested list, binning etc.). My question is, have people profiled these algorithms? If so, ...
python database next-gen alignment sequencing written 10.3 years ago by User 1586280 • updated 2.5 years ago by endrebak840

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