User: bioinformatics.queries

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Posts by bioinformatics.queries

<prev • 45 results • page 1 of 5 • next >
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Comment: C: Error in running RSEM
... Thank you so much for your response. ...
written 2 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... Yes the problem was just with the compressed file. Thank you so much. ...
written 4 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... Hi I was able to run `sortmerna` for filtering `rDNA` from `DNA-sequencing` data. It is required to `unzip` the `fastq` file to run the `sortmerna`. I did take 100 reads and was able to filter out `rDNA` from the sequencing data. Thanks ...
written 5 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... Thanks you so much for your response. ...
written 7 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... I run the test file and it has been executed as per the suggestion and I have the results attached to this link [test_rna_results][1]. I have also included both `stderr` and `stdout' in the uploaded file. I would like to know if the command was executed correct? My next question is can we use `sor ...
written 8 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... In answer to your question. 1. I did run on HPC cluster and we use `sbatch` to run the command. 2. I do not know how was it installed. 3. yes the output paths are accessible and writable. 4. I am pointing my `--workdir` to `/data/shilpia2/NOR.sequecnes/temp/` 5. I will work on the test read set. ...
written 8 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... I ran the command as suggested and the log-file was generated. The command stopped after running for 2 days of specified wall time without generating any results. I am looking forward for suggestions ahead. I used 56 processors to run the command. Please find the log-file in the link-below. [log-fi ...
written 9 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... I am so sorry with the screen shot. Please find the link for log file being uploaded. [log-file-sortmerna][1] [1]: https://gofile.io/d/OKeVCL ...
written 11 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... ![stdout][1] Here is stdout [1]: https://i.ibb.co/jzqfnvq/stdout.png ...
written 11 days ago by bioinformatics.queries50
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Comment: C: sortmerna terminates without generating the file with rRNA being removed
... Here is stderr ![enter image description here][1] [1]: https://i.ibb.co/6YYC9Nc/stderr.png ...
written 11 days ago by bioinformatics.queries50

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