User: bioinformatics.queries
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Posts by bioinformatics.queries
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... Hi
I want to create a table with chromosomes bins of 1Mb size and compute the density of expressed genes. Could somebody suggest how to do that? ...
written 11 days ago by
bioinformatics.queries • 0
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Comment:
C: Smoothing densities of genes in R
... Hi
Could you tell me how did you make table with chromsones bins 1Mb size and the density of expressed genes.
Thanks ...
written 11 days ago by
bioinformatics.queries • 0
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... Thanx Blin for sharing the link ...
written 19 days ago by
bioinformatics.queries • 0
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... Hi
Could anyone share the python script to download fasta sequence from NCBI?
...
written 19 days ago by
bioinformatics.queries • 0
• updated
19 days ago by
genomax ♦ 87k
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... Hi
I am trying to run RSEM and the command is as below
./rsem-calculate-expression --bowtie-path /home/shilpia2/bowtie2-2.3/ --phred64-quals -p 8 --output-genome-bam /data/shilpia2/NOR.sequecnes/293T/293TInput2_S21_L008_R1_001.fastq /data/shilpia2/ref/human /output/293T
However it shows ...
written 20 days ago by
bioinformatics.queries • 0
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Comment:
C: Query related to RSEM
... I have used the following command but it terminated without running
./rsem-calculate-expression --phred64-quals -p 8 --gzipped-read-file /data/shilpia2/NOR.sequences/293T/293TInput2_S21_L008_R1_001.fastq.gz /data/shilpia2/ref/human_gencode /data/shilpia2/NOR.sequences/293T/293T
can any ...
written 20 days ago by
bioinformatics.queries • 0
• updated
20 days ago by
RamRS ♦ 28k
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... Hi
I am running RSEM for the first time. In the command for the expression it says as follow
rsem-calculate-expression --phred64-quals \
-p 8 \
--output-genome-bam \
/data/mmliver.fq \
...
written 20 days ago by
bioinformatics.queries • 0
• updated
20 days ago by
RamRS ♦ 28k
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