User: bioinformatics.queries

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Posts by bioinformatics.queries

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Create table with 1MB bin size and compute the gene density
... Hi I want to create a table with chromosomes bins of 1Mb size and compute the density of expressed genes. Could somebody suggest how to do that? ...
rna-seq written 11 days ago by bioinformatics.queries0
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Comment: C: Smoothing densities of genes in R
... Hi Could you tell me how did you make table with chromsones bins 1Mb size and the density of expressed genes. Thanks ...
written 11 days ago by bioinformatics.queries0
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Comment: C: Python script to download fasta files from ncbi
... Thanx Blin for sharing the link ...
written 19 days ago by bioinformatics.queries0
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Python script to download fasta files from ncbi
... Hi Could anyone share the python script to download fasta sequence from NCBI? ...
sequence written 19 days ago by bioinformatics.queries0 • updated 19 days ago by genomax87k
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Error in running RSEM
... Hi I am trying to run RSEM and the command is as below ./rsem-calculate-expression --bowtie-path /home/shilpia2/bowtie2-2.3/ --phred64-quals -p 8 --output-genome-bam /data/shilpia2/NOR.sequecnes/293T/293TInput2_S21_L008_R1_001.fastq /data/shilpia2/ref/human /output/293T However it shows ...
rna-seq written 20 days ago by bioinformatics.queries0
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Comment: C: Query related to RSEM
... I have used the following command but it terminated without running ./rsem-calculate-expression --phred64-quals -p 8 --gzipped-read-file /data/shilpia2/NOR.sequences/293T/293TInput2_S21_L008_R1_001.fastq.gz /data/shilpia2/ref/human_gencode /data/shilpia2/NOR.sequences/293T/293T can any ...
written 20 days ago by bioinformatics.queries0 • updated 20 days ago by RamRS28k
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Query related to RSEM
... Hi I am running RSEM for the first time. In the command for the expression it says as follow rsem-calculate-expression --phred64-quals \ -p 8 \ --output-genome-bam \ /data/mmliver.fq \ ...
rsem written 20 days ago by bioinformatics.queries0 • updated 20 days ago by RamRS28k

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