User: genetician2016

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Posts by genetician2016

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Comment: A: Trimmomatic did a massive trimming!!!
... in the RNAseq data analysis, You have to be careful to strike a balance between acceptable quality and also minimize the number of discarded reads. it should be noted, all the adapters contamination should be trim. I recommend you 123Fastq which combine FASTQC and trimmomatic in a highly interactive ...
written 5 weeks ago by genetician201610
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Comment: C: quality trimming with trimmomatic
... phred 33, is your imported file encoding format, actually. trimmomatic can not recommend you such parameters to trim, it's only a trimmer. I recommend you 123Fastq which combine FASTQC and trimmomatic in a highly interactive graphical user interface. 123Fastq can suggest you recommendation to trim ...
written 5 weeks ago by genetician201610
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Answer: A: Trimmomatic: How to improve FastQC report by adjusting the thresholds in running
... Trimmomatic detects automatically your imported file encoding PHRED format based on first 10000 reads of its. trimming process strategy totally related to your pipeline. for example in the RNAseq data analysis, You have to be careful to strike a balance between acceptable quality and also minimize ...
written 5 weeks ago by genetician201610
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Comment: A: What is a good Trimmomatic parameter?
... in the RNAseq data analysis, You have to be careful to strike a balance between acceptable quality and also minimize the number of discarded reads. it should be noted, all the adapters contamination should be trim. I recommend you 123Fastq which combine FASTQC and trimmomatic in a highly interactive ...
written 5 weeks ago by genetician201610

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