User: Dmitri Ivanovich

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Posts by Dmitri Ivanovich

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Comment: C: How to perform GISTIC analysis on GenePattern?
... Thank you for you helping Kevin! But after I sorted my files numerically, it still showed similar result (... do not match any markers...) . Is it possible that the Marker File I submitted doesn't fit TCGA data, or that the online version of GISTIC2 doesn't work at all? ...
written 22 days ago by Dmitri Ivanovich0
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Comment: C: gistic for whole genome sequencing copy number analysis
... Hi Benche, It seems that I have met similar problem. Have you solve yours? ...
written 27 days ago by Dmitri Ivanovich0
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How to perform GISTIC analysis on GenePattern?
... Hi guys, I have got a CNV data from TCGA and the marker file as shown below, - Seg file: - Sample Chromosome Start End Num_Probes Segment_Mean - TCGA.05.4249.01A 1 3218610 120527361 67456 -0.1725 - TCGA.05.4249.01A 1 149881398 167526508 10663 0.5859 - TCGA.05.4249.01A 1 167526675 167526823 2 ...
gistic snp tcga rna-seq cnv written 27 days ago by Dmitri Ivanovich0

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