User: Triple Nipple

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Posts by Triple Nipple

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How to get transcripts counts from STAR
... Hello, After successful runs of STAR, in the ReadsPerGene.out.tab file, I only have counts of Genes (ENSG/ENSMUSG) and I don't have counts of transcripts (ENST/ENSMUST), which I need. My STAR index genome was obtained by reference genome from ENSEMBL and the .gtf annotation files were achieved fr ...
deseq2 star rna-seq written 9 hours ago by Triple Nipple0 • updated 9 hours ago by h.mon28k
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Assembly of DNA from .bam file
... From a .bam file of RNA sequence reads that are aligned to a mouse reference genome, how can I get a new bam file that contains this same genome assembled in reference to mm10 reference genome. If I made things clear I need to get one long read sequence for each location and not many reads like it's ...
genome assembly bam rna-seq sequence written 8 weeks ago by Triple Nipple0 • updated 8 weeks ago by swbarnes27.0k

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