User: Gvj

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Gvj440
Reputation:
440
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Location:
Netherlands
Last seen:
1 year ago
Joined:
8 years, 6 months ago
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g********@gmail.com

Posts by Gvj

<prev • 45 results • page 1 of 5 • next >
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Answer: A: Questions regarding how to compare 2 genomes
... Hi nnhung232, I assume you have a mapping population in which your disease phenotype is segregating and your objective is to genetically map the resistant locus. If so then you may try [mapping-by-sequencing/SHOREmap][1], [NGM][2] or [Mutmap][3] tools. The fundamental principle behind all these tool ...
written 3.0 years ago by Gvj440
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Tools for genotyping using whole genome re-sequencing data with limited coverage (GBS)
... Dear All, What are the tools (which I can download and use) available for genotyping using low coverage whole genome re-sequencing data? Currently I can find MSG( Andolfatto et al 2011) and MPR(Xie et al 2010) are the two tools which uses HMM to genotype from a very low coverage resequencing ( < ...
sequencing tools genotyping snp gbs written 3.1 years ago by Gvj440
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Comment: C: Bioinformatics internship available in the Netherlands
... There is definitely a compensation for living+ commuting to work, however its an internship stipend. This may be something you may discuss with HR. For more about the company, you may look here   ...
written 4.8 years ago by Gvj440
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Job: Bioinformatics internship available in the Netherlands
... Bioinformatics has become the integral part of breeding. The challenge is to develop tools which to analyse and integrate large data in a meaningful manner. The successful candidate will work on two different exciting projects. (1) Building up the phylogenetic relationship between various accessions ...
genome alignment job sequencing written 4.8 years ago by Gvj440 • updated 4.8 years ago by Devon Ryan88k
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Answer: A: Get Amino Acid Changes From Snp Calls
... Hi Rohan, You may try snpeff , its pretty easy to run if you have an annotation of genes. ...
written 4.9 years ago by Gvj440
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Associating Gc Content With Genomic Features
... Hey all, When I have identified certain events in genome and would like to check whether it is associated with GC content, histone mark etc, What kind of statistical test I should do ? Eg: I have calculated the GC content (y axis) from the event till 1kb. Now knowing the average GC content as 0.3 ...
p-value gc statistics written 5.7 years ago by Gvj440 • updated 5.7 years ago by Sean Davis25k
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Comment: C: What Are The > Signs In Samtools Pileup Strings?
... But, Do you know what does make it to skip ? I see that read quality is good there and only few reads skipped . ...
written 5.8 years ago by Gvj440
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Comment: C: What Is A Typical Salary Range For Bioinformatician In Singapore
... Thanks for the link but I have seem this before. I am interested about Singapore ...
written 5.9 years ago by Gvj440
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What Is A Typical Salary Range For Bioinformatician In Singapore
... Hi All, Does anyone know what is the range of industrial salary one could expect for a Ph.D bioinformatician in Singapore ? If you also know what % of hike one should expect with 1-2 year experience on the same field ? General employment information about Singapore is also welcome (Like incentives ...
written 5.9 years ago by Gvj440 • updated 5.4 years ago by Jeremy Leipzig18k
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Comment: C: Count References Read From Bam File
... I found the answer for ">" and "<" at http://samtools.sourceforge.net/samtools.shtml it means for a reference skip I am not deleting this comment, so that someone could benefit out of it ...
written 6.0 years ago by Gvj440

Latest awards to Gvj

Great Question 2.9 years ago, created a question with more than 5,000 views. For How To Split A Multiple Fasta
Great Question 2.9 years ago, created a question with more than 5,000 views. For How To Compare Gene Models
Prophet 2.9 years ago, created a post with more than 20 followers. For How To Split A Multiple Fasta
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Associating Gc Content With Genomic Features
Popular Question 2.9 years ago, created a question with more than 1,000 views. For How To Split A Multiple Fasta
Epic Question 4.7 years ago, created a question with more than 10,000 views. For How To Split A Multiple Fasta
Popular Question 4.7 years ago, created a question with more than 1,000 views. For How To Compare Gene Models
Popular Question 4.7 years ago, created a question with more than 1,000 views. For What Is A Typical Salary Range For Bioinformatician In Singapore
Popular Question 4.7 years ago, created a question with more than 1,000 views. For How To Split A Multiple Fasta
Popular Question 4.7 years ago, created a question with more than 1,000 views. For Count References Read From Bam File
Good Question 4.8 years ago, asked a question that was upvoted at least 5 times. For How To Split A Multiple Fasta
Appreciated 4.9 years ago, created a post with more than 5 votes. For How To Split A Multiple Fasta
Appreciated 4.9 years ago, created a post with more than 5 votes. For How To Compare Gene Models
Great Question 4.9 years ago, created a question with more than 5,000 views. For How To Split A Multiple Fasta
Good Question 4.9 years ago, asked a question that was upvoted at least 5 times. For How To Split A Multiple Fasta
Popular Question 4.9 years ago, created a question with more than 1,000 views. For How To Split A Multiple Fasta
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Parser For Genscan And Fgenesh
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Convert Agi Locus To Genbank Or Embl Format
Popular Question 4.9 years ago, created a question with more than 1,000 views. For What Is A Typical Salary Range For Bioinformatician In Singapore
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Genscan Gene Prediction
Popular Question 4.9 years ago, created a question with more than 1,000 views. For How To Compare Gene Models
Teacher 4.9 years ago, created an answer with at least 3 up-votes. For A: Gff3 + Fasta To Genbank (Augustus Training Set)
Student 4.9 years ago, asked a question with at least 3 up-votes. For How To Split A Multiple Fasta
Student 4.9 years ago, asked a question with at least 3 up-votes. For What Is A Typical Salary Range For Bioinformatician In Singapore
Student 4.9 years ago, asked a question with at least 3 up-votes. For How To Compare Gene Models

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