User: aapapaiwannou

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Posts by aapapaiwannou

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Comment: A: TPM or FPKM for single cell RNA seq experiment ?
... After some reading I should use TPM. So I have a count matrix( reads per transcript or fragments per transcript) derived from featureCounts (subread package) and I want to normalize in order to have TPM and afterwards to use this as an input to SINCERA pipeline for single cell transcriptome analy ...
written 12 days ago by aapapaiwannou0
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TPM or FPKM for single cell RNA seq experiment ?
... Hello, I am doing my first NGS analysis and I am working with single cell RNA seq data. I want to be sure if its ok to use TPM for the downstream analysis (which I am planing to start with SINCERA pipeline ) thanks in advance for your help, Anna ...
gene next-gen rna-seq written 12 days ago by aapapaiwannou0 • updated 12 days ago by Macspider3.0k

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