Moderator: Daniel Swan

gravatar for Daniel Swan
Daniel Swan13k
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Location:
Earlham Institute, Norwich, UK
Website:
http://metagenom.es/
Twitter:
DrDanielSwan
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Last seen:
1 month, 2 weeks ago
Joined:
7 years, 6 months ago
Email:
d**@danielswan.net

Head of Platforms & Pipelines at the Earlham Institute in Norwich.

You can find out more about the P&P Group at http://earlham.ac.uk/platforms-and-pipelines-group

Blog: http://metagenom.es Twitter: http://twitter.com/DrDanielSwan

Opinions are my own and not that of my employer.  Probably acting more as housekeeper than contributor these days as I have been in non-research management roles for some years now!

Posts by Daniel Swan

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Job: Genomics Pipeline Software Developer - Earlham Institute, Norwich UK
... We currently have a job open in the Genomics Pipelines Group for a Software Developer. Please note this is not a bioinformatics post per se, but will work closely with bioinformaticians and others in a computational biology focused research institute. **Closing date is the 9th August** Full details ...
lims job written 6 weeks ago by Daniel Swan13k
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Comment: C: Bioinformatician/Statistical Geneticist at Cytox Ltd (UK)
... You'll notice that most of these are 'desirable' not 'essential' it's the formatting of my post I'm afraid. I don't think the essential criteria are at all excessive for a bioinformatics post. Most employers will consider interviewing someone who ticks 'most' of the boxes. The post is not working in ...
written 7 weeks ago by Daniel Swan13k
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Job: Bioinformatician/Statistical Geneticist at Cytox Ltd (UK)
... I'm not posting this on behalf of myself, but for a company I worked with on a project a couple of years ago who I'm prepared to vouch for in terms of how interesting I think the role might be for the right person! They're called Cytox and have recently been in the news with their Alzheimer's Dx w ...
bioinformatics job statistics written 7 weeks ago by Daniel Swan13k
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Job: Bioinformatician (maternity cover) at the Earlham Institute, Norwich UK
... ![enter image description here][1] The Platforms and Pipelines (P&P) Group at Earlham is responsible for delivering the BBSRC National Capability in Genomics (NCG), providing access to state of the art genomics technologies for research groups throughout the UK as well as delivering sequencing ...
bioinformatics ngs job genomics written 6 months ago by Daniel Swan13k
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Comment: C: Somatic Mutation Identification without Paired Normal Sample
... You don't have paired samples and there may have been sample mix ups that you can't figure out? Proceed with analysing this data with caution, regardless of the unmatched samples - you just don't know what you're dealing with and that's a dangerous place to be starting an analysis, unsure of your in ...
written 9 months ago by Daniel Swan13k
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Comment: C: How to differentiate between prokaryotic and eukaryotic transcript from RNAseq d
... Please don't append comments as answers!!! Please use 'add comment' to posts you wish to reply to. ...
written 9 months ago by Daniel Swan13k
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Comment: C: Why we need 100X coverage to get a high-quality assembly?
... Take a look at the 10X Chromium. If you're doing a diploid, vertebrate, then you can probably get pretty good results with this plus some standard Illumina libraries. I think PacBio, unless you've got the budget and a Sequel, is going to be prohibitively expensive. Don't discount things like DISCOVA ...
written 9 months ago by Daniel Swan13k
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Comment: C: Why annotations are not encoded using standard informatic format ?
... GFF predates JSON by several years... ...
written 9 months ago by Daniel Swan13k
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Comment: C: Oxford Nanopore sequencing technology
... Hello Carlos Caicedo! We believe that this post does not fit the main topic of this site. Look at SeqAnswers instead. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a re ...
written 10 months ago by Daniel Swan13k
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Answer: A: Optical mapping service company or lab
... My team at the [Earlham Institute][1] can offer this if you're interested in the BioNano Genomics Irys. Drop us an email projects@earlham.ac.uk [1]: http://earlham.ac.uk/genomic-services ...
written 10 months ago by Daniel Swan13k

Latest awards to Daniel Swan

Scholar 7 weeks ago, created an answer that has been accepted. For A: EMBOSS EINVERTED offline version
Commentator 7 weeks ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Teacher 7 weeks ago, created an answer with at least 3 up-votes. For A: What More Than Gene Expression Analysis Can I Do With My Rna-Seq Data?
Appreciated 6 months ago, created a post with more than 5 votes. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Commentator 6 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Prophet 8 months ago, created a post with more than 20 followers. For Appropriate Podcasts For A Bioinformatician?
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Understanding Microarray Datasets
Commentator 11 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: What More Than Gene Expression Analysis Can I Do With My Rna-Seq Data?
Good Answer 11 months ago, created an answer that was upvoted at least 5 times. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Popular Question 11 months ago, created a question with more than 1,000 views. For Indel Detection For 454 Resequencing
Appreciated 13 months ago, created a post with more than 5 votes. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Commentator 16 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Good Answer 19 months ago, created an answer that was upvoted at least 5 times. For A: How To Retrieve A .Fastaq File From Sra Using Wget? (And Not Aspera)
Appreciated 21 months ago, created a post with more than 5 votes. For A: Which C++ Libraries Are Best For Dealing With Fastq Files?
Commentator 22 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Great Question 22 months ago, created a question with more than 5,000 views. For Appropriate Podcasts For A Bioinformatician?
Scholar 22 months ago, created an answer that has been accepted. For A: EMBOSS EINVERTED offline version
Commentator 23 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: Which C++ Libraries Are Best For Dealing With Fastq Files?
Appreciated 23 months ago, created a post with more than 5 votes. For Appropriate Podcasts For A Bioinformatician?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Cufflinks Hangs On
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Cufflinks Hangs On

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