Moderator: Daniel Swan

gravatar for Daniel Swan
Daniel Swan13k
Reputation:
12,810
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Location:
Aberdeen, UK
Website:
http://metagenom.es/
Twitter:
DrDanielSwan
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Google Scholar Page
Last seen:
2 months, 4 weeks ago
Joined:
7 years, 10 months ago
Email:
d**@danielswan.net

Managing bioinformatics delivery at a small Scottish biotech. Interests - genome assembly, metagenomics, microbes and their application in the oil and gas, food and pharma sectors.

Posts by Daniel Swan

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Job: Research Fellow in Microbial Genomics - University of Aberdeen
... Posting on behalf of a collaborator: REF: SBS028R We seek a highly motivated and interactive Microbial Genomicist to take a leading role in a Natural Environment Research Council-funded project entitled “Evolution of thaumarchaeotal metabolism under contrasting oxygen conditions”. The project is f ...
genome assembly microbial genomics job written 3 months ago by Daniel Swan13k
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Job: Genomics Pipeline Software Developer - Earlham Institute, Norwich UK
... We currently have a job open in the Genomics Pipelines Group for a Software Developer. Please note this is not a bioinformatics post per se, but will work closely with bioinformaticians and others in a computational biology focused research institute. **Closing date is the 9th August** Full details ...
lims job written 5 months ago by Daniel Swan13k
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Comment: C: Bioinformatician/Statistical Geneticist at Cytox Ltd (UK)
... You'll notice that most of these are 'desirable' not 'essential' it's the formatting of my post I'm afraid. I don't think the essential criteria are at all excessive for a bioinformatics post. Most employers will consider interviewing someone who ticks 'most' of the boxes. The post is not working in ...
written 5 months ago by Daniel Swan13k
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Job: Bioinformatician/Statistical Geneticist at Cytox Ltd (UK)
... I'm not posting this on behalf of myself, but for a company I worked with on a project a couple of years ago who I'm prepared to vouch for in terms of how interesting I think the role might be for the right person! They're called Cytox and have recently been in the news with their Alzheimer's Dx w ...
bioinformatics job statistics written 5 months ago by Daniel Swan13k
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Job: Bioinformatician (maternity cover) at the Earlham Institute, Norwich UK
... ![enter image description here][1] The Platforms and Pipelines (P&P) Group at Earlham is responsible for delivering the BBSRC National Capability in Genomics (NCG), providing access to state of the art genomics technologies for research groups throughout the UK as well as delivering sequencing ...
bioinformatics ngs job genomics written 10 months ago by Daniel Swan13k
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Comment: C: Somatic Mutation Identification without Paired Normal Sample
... You don't have paired samples and there may have been sample mix ups that you can't figure out? Proceed with analysing this data with caution, regardless of the unmatched samples - you just don't know what you're dealing with and that's a dangerous place to be starting an analysis, unsure of your in ...
written 13 months ago by Daniel Swan13k
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Comment: C: How to differentiate between prokaryotic and eukaryotic transcript from RNAseq d
... Please don't append comments as answers!!! Please use 'add comment' to posts you wish to reply to. ...
written 13 months ago by Daniel Swan13k
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Comment: C: Why we need 100X coverage to get a high-quality assembly?
... Take a look at the 10X Chromium. If you're doing a diploid, vertebrate, then you can probably get pretty good results with this plus some standard Illumina libraries. I think PacBio, unless you've got the budget and a Sequel, is going to be prohibitively expensive. Don't discount things like DISCOVA ...
written 13 months ago by Daniel Swan13k
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Comment: C: Why annotations are not encoded using standard informatic format ?
... GFF predates JSON by several years... ...
written 13 months ago by Daniel Swan13k
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Comment: C: Oxford Nanopore sequencing technology
... Hello Carlos Caicedo! We believe that this post does not fit the main topic of this site. Look at SeqAnswers instead. For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with. If you disagree please tell us why in a re ...
written 14 months ago by Daniel Swan13k

Latest awards to Daniel Swan

Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Appreciated 5 months ago, created a post with more than 5 votes. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Scholar 5 months ago, created an answer that has been accepted. For A: EMBOSS EINVERTED offline version
Commentator 5 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: What More Than Gene Expression Analysis Can I Do With My Rna-Seq Data?
Appreciated 10 months ago, created a post with more than 5 votes. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Commentator 10 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Prophet 12 months ago, created a post with more than 20 followers. For Appropriate Podcasts For A Bioinformatician?
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: Understanding Microarray Datasets
Commentator 15 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: What More Than Gene Expression Analysis Can I Do With My Rna-Seq Data?
Good Answer 15 months ago, created an answer that was upvoted at least 5 times. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Popular Question 15 months ago, created a question with more than 1,000 views. For Indel Detection For 454 Resequencing
Appreciated 17 months ago, created a post with more than 5 votes. For A: How Does A Bioinformatics Scientist Document His/Her Work?
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Commentator 20 months ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Good Answer 23 months ago, created an answer that was upvoted at least 5 times. For A: How To Retrieve A .Fastaq File From Sra Using Wget? (And Not Aspera)
Appreciated 2.1 years ago, created a post with more than 5 votes. For A: Which C++ Libraries Are Best For Dealing With Fastq Files?
Commentator 2.1 years ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Great Question 2.2 years ago, created a question with more than 5,000 views. For Appropriate Podcasts For A Bioinformatician?
Scholar 2.2 years ago, created an answer that has been accepted. For A: EMBOSS EINVERTED offline version
Commentator 2.2 years ago, created a comment with at least 3 up-votes. For C: Exon-Seq Mutation Detection
Good Answer 2.2 years ago, created an answer that was upvoted at least 5 times. For A: Which C++ Libraries Are Best For Dealing With Fastq Files?
Appreciated 2.2 years ago, created a post with more than 5 votes. For Appropriate Podcasts For A Bioinformatician?
Teacher 2.2 years ago, created an answer with at least 3 up-votes. For A: Cufflinks Hangs On

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