User: xfliwz

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xfliwz50
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China
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http://xfliwz.lofter.com/
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1 year, 7 months ago
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8 years, 2 months ago
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Posts by xfliwz

<prev • 10 results • page 1 of 1 • next >
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Comment: C: umitools - working with UMI incorporated data
... Hello, in my PE reads, both 1.fq and 2.fq have UMIs. 1.fq: UMI1=============       2.fq: UMI2============= To take advantage of UMIs, I should take two UMIs into consideration. So, does umitools can solve my problem? ...
written 5.8 years ago by xfliwz50
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Answer: A: deepTools: user-friendly tools for the normalization and visualization of deep-s
... Hello, Deeptools is a powerful method to visualize NGS data sets.   I used "bamCorrelate bins .." with --binSize 1000(left) and 10000(right) respectively(both of them were plot with '--corMethod pearson'). And got two distinct pictures. So, I wonder that which value is better to show the correla ...
written 6.1 years ago by xfliwz50
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Comment: C: How to draw venn (more than 6 elements) with Vennerable R package?
... Thanks for your response! Yes, I also got that error. I wonder whether there is other parameters or another tools to plot Chow-Ruskey diagram ...
written 6.1 years ago by xfliwz50
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Comment: C: How to draw venn (more than 6 elements) with Vennerable R package?
... Thanks for your help! I had plotted 4 sets data successfully with that guidence.But it not worked with 8 sets ############## >data<-Venn(list("a"=a,"b"=b,"c"=c,"d"=d,"e"=e,"f"=f,"g"=g,"h"=h)) >plot(data,doWeight=T) Error: length(cutedge) == 1 is not TRUE ################## So, how to ...
written 6.1 years ago by xfliwz50
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How to draw Chow-Ruskey diagram (more than 6 elements) with Vennerable R package?
... How to draw venn (more than 6 elements) like above with Vennerable R package? Ref1: Transcriptional Architecture and Chromatin Landscape of the Core Circadian Clock in Mammals Ref2: Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes   ...
chow-ruskey diagram blog venn written 6.1 years ago by xfliwz50
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Comment: A: umitools - working with UMI incorporated data
... Dose umitools adapt to paired-end data(PE is popular in NGS analysis)? ...
written 6.1 years ago by xfliwz50
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Comment: C: integration analysis of multiple ChIP-seq (TFBS or histone from ENCODE)
... Thanks for your answer! It is very useful. ChromHMM is a powerful tools to do integrated analysis ChIP-seq data. You know that the parameter of state is user-defined. How could I know the value of state is suitable for my own data sets? ...
written 6.4 years ago by xfliwz50
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integration analysis of multiple ChIP-seq (TFBS or histone from ENCODE)
... Hello, I am interested in system analysis ChIP-seq data (tfbs or histone). I wonder if I have several ChIP-seq data sets of transcription factors (TF) and histone modification, how can I integrate those ChIP-seq data information to uncover the under relationship of those TF or histone? Any suggestio ...
chip-seq integrate analysis sequencing written 6.4 years ago by xfliwz50 • updated 6.4 years ago by Emily_Ensembl21k
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Answer: A: Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
... Hello, thanks for your response! I try to use igblastwpr. But I am not familiar with JAVA. So could you package those scripts into a jar file. Thanks!   ...
written 6.5 years ago by xfliwz50
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Comment: C: Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data
... Hello, I want to use MiTCR to analysis my IGH data. Is it possible to integrate those reference into MiTCR or provide a parameter of reference file of fasta? Thanks for your attention! ...
written 6.5 years ago by xfliwz50

Latest awards to xfliwz

Great Question 4.2 years ago, created a question with more than 5,000 views. For How to draw Chow-Ruskey diagram (more than 6 elements) with Vennerable R package?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For integration analysis of multiple ChIP-seq (TFBS or histone from ENCODE)
Popular Question 5.6 years ago, created a question with more than 1,000 views. For How to draw Chow-Ruskey diagram (more than 6 elements) with Vennerable R package?
Teacher 5.6 years ago, created an answer with at least 3 up-votes. For A: Mitcr: A Software Tool For Analyzing T-Cell Receptor Sequencing Data

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