User: sarvism

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sarvism0
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Posts by sarvism

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to convert vcf file to frequency file for sweepfinder2
... Hi, have you been able to figure this out? I am also dealing with a similar issue.Thanks! ...
written 7 months ago by sarvism0
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Hardy-Weinberg Equilibrium Quality Control
... Hi, In determining the P threshold for Hardy-Weinberg Equilibrium in a trio/family based GWAS, which is better to use as the reference for determining the P value: cases or parents? Or if siblings are available, would this be better? As cases, parents and siblings share some but not all possible pr ...
gwas hwe hardy-weinberg quality control snp written 10 months ago by sarvism0
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Comment: C: NCBI vs Liftover vs ENSEMBL for Assembly Conversion for SNP data (GRCh37 to GRCh
... Sorry for the late response. NCBI is working for me and gave very few SNPs that were not in the new build, which is good. If I have other questions I will let you know, thank you for your help! ...
written 10 months ago by sarvism0
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Comment: C: NCBI vs Liftover vs ENSEMBL for Assembly Conversion for SNP data (GRCh37 to GRCh
... Thank you for your answer. I have primary assembly data only, so in NCBI I would be remapping only the primary assembly alignments. ...
written 10 months ago by sarvism0
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NCBI vs Liftover vs ENSEMBL for Assembly Conversion for SNP data (GRCh37 to GRCh38)
... Hi, I'm a beginner to bioinformatics so hopefully someone can help with my question! I am trying to go from GRCh37 to GRCh38 for a large number of SNPs. I have an input bed file of around 700,000 SNPs that I have used for NCBI remap, ENSEMBL Assembly Converter, and Liftover (UCSC). These websites a ...
ncbi assembly snp liftover ensembl written 10 months ago by sarvism0 • updated 8 months ago by Biostar ♦♦ 20

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