User: Uncle Gabby

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Uncle Gabby20
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20
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New User
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Last seen:
7 years, 4 months ago
Joined:
7 years, 5 months ago
Email:
w**********@yahoo.com

about me

Posts by Uncle Gabby

<prev • 7 results • page 1 of 1 • next >
7
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Entrez E-Utils Script Returns Different Numbers Of Sequences Each Rn
... Hello there, I am trying to retrieve all sequences for a particular taxon from the NCBI. I found a script in a guide published by the NCBI on using entrez e-utilities: http://www.ncbi.nlm.nih.gov/books/NBK25498/ (application #3). I will paste the script below. When I run the script I expect to g ...
ncbi entrez script retrieval written 7.4 years ago by Uncle Gabby20 • updated 6.0 years ago by Giovanni M Dall'Olio26k
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Comment: C: Error Using Makeblastdb
... TY. I got it to work too. ...
written 7.4 years ago by Uncle Gabby20
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Comment: C: Error Using Makeblastdb
... I got rid of that junk and makeblastdb worked fine. Thanks! I can't believe I missed those errors. ...
written 7.4 years ago by Uncle Gabby20
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Comment: C: Error Using Makeblastdb
... Thank you I found 374 dashes, all in the title sections. I think the sequence data are good. I am posting a link to my file on dropbox: http://dl.dropbox.com/u/104729694/Herpesviridae.fna Thank you for helping me troubleshoot this. ...
written 7.4 years ago by Uncle Gabby20
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Error Using Makeblastdb
... Hi there, I am trying to run makebastdb to create a new BLAST database. The program starts but cuts out abruptly with an Error: Error: ncbi::s_FixBioseqDeltas() - Bioseq must have Seq-data or Delta containing only literals. The input should be good. They are correctly formatted fasta files I pul ...
makeblastdb database blast written 7.4 years ago by Uncle Gabby20 • updated 5.9 years ago by Biostar ♦♦ 20
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Comment: C: Trouble Using Bio::Alignio In Perl Script To Covert Alignment To Maf Format
... Oh well. Thank you. ...
written 7.4 years ago by Uncle Gabby20
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Trouble Using Bio::Alignio In Perl Script To Covert Alignment To Maf Format
... Hello there, I hope someone might have some insight into a problem I am having using the BioPerl module Bio::AlignIO in a perl script to convert a fasta formatted alignment into MAF format. I would appreciate any help you could offer in terms of getting the conversion script to work OR information ...
maf bioperl file conversion written 7.4 years ago by Uncle Gabby20 • updated 7.4 years ago by Whetting1.5k

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