User: tamu.anand

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Posts by tamu.anand

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Comment: C: Question on bbduk ftl option when used with adapter and quality trimming
... Tagging [Brian Bushnell][1] and [Genomax][2] for help on this. Thanks in advance. [1]: https://www.biostars.org/u/14684/ [2]: https://www.biostars.org/u/18713/ ...
written 1 day ago by tamu.anand0
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Question on bbduk ftl option when used with adapter and quality trimming
... I am trying to use bbduk to do adapter and quality trimming and then use ftl=12. When does the force trimming happen - I know that adapter trimming happens before quality trimming My question: what's the order of operations if I use bbduk.sh in=read.fq out=clean.fq ref=adapters.fa ftl=12 min ...
bbduk rna-seq written 4 days ago by tamu.anand0

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