User: ali.kian.saei

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Posts by ali.kian.saei

<prev • 15 results • page 1 of 2 • next >
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How can i find the name of my ligands in molegro vitual docker?
... i want to know the name of my ligand in molegro result. i give for example drug with the name of aspirin and metformin to Molegro virtual docker for dock with my protein. but in the result the name of the poses that detect for drugs change to special name like NM01. i want to know how can i know ...
molegro dock docking written 6 months ago by ali.kian.saei10
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Comment: C: what is the best software for energy minimization of molecule?
... hi i think this question relate to the site because this question is one step of molecule docking which is one object of bioinformatics topics for drug design ...
written 6 months ago by ali.kian.saei10
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(Closed) what is the best software for energy minimization of molecule?
... i want to do energy minimization for drugs with pdb format for docking. which software is better? ...
energy minimization written 6 months ago by ali.kian.saei10
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Comment: C: how can i find binding site sequence of two protein together?
... thanks for your answers. i have pdb format of domain of my proteins but there isn' t any full structure of whole protein. i try to find computational method for predict binding site. ...
written 7 months ago by ali.kian.saei10
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Comment: C: how can i find binding site sequence of two protein together?
... thanks for your answer. but i know the domains (about 160 residue) that two proteins bind together but i want to know the sequence of two proteins that directly bind together. thanks ...
written 7 months ago by ali.kian.saei10
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how can i find binding site sequence of two protein together?
... i want to find binding site sequence of two protein to each others. in papers i didn t find any data but i want to find database which can help me this sequence important for me for design inhibitor for this binding site of two proteins ...
protein interaction written 7 months ago by ali.kian.saei10 • updated 7 months ago by Mensur Dlakic6.0k
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(Closed) why my small molecule (ligand) import as protein in molegro for docking?
... i want to import my small molecules as ligand for docking with molegro but thses molecule import as protein. what can i do? ...
docking written 7 months ago by ali.kian.saei10 • updated 5 months ago by Biostar ♦♦ 20
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Is necessary delete cofactors of protein for docking?
... i want dock my protein to FDA drugs. i want to know is necessary to delete cofactor of my protein which these cofactor is ZN and bind to domain of protein. i want to find drug which can bind to this domain ...
docking written 7 months ago by ali.kian.saei10
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how can i find correlation between two pathway?
... i want to find the way that can find the correlation between two pathway like exosome and autophagy in theri signalling and genes and poteins ...
pathway written 7 months ago by ali.kian.saei10 • updated 7 months ago by Kevin Blighe63k
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Comment: C: how can i change any drug format to pdb format?
... hi yes i know that but in this way i have to download each drug one by one i try to find a way to download all of drugs in pdb format at once ...
written 8 months ago by ali.kian.saei10

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