Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: Shaminur

gravatar for Shaminur
Shaminur • 90
Reputation:
90
Status:
Trusted
Location:
Dhaka University
Last seen:
8 hours ago
Joined:
1 year, 2 months ago
Email:
m*****************@gmail.com

BS Hon's and MS in Microbiology, Department of Microbiology, University of Dhaka.

Posts by Shaminur

<prev • 71 results • page 1 of 8 • next >
0
votes
2
answers
140
views
2
answers
Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... [harmony][1] also might help here. [1]: https://htmlpreview.github.io/?https://github.com/satijalab/seurat.wrappers/blob/master/docs/harmony.html ...
written 6 days ago by Shaminur • 90
0
votes
0
answers
87
views
0
answers
Comment: C: paired end metagenomics analysis
... [IDseq][1] is also a good option for taxonomic assignment. [1]: https://idseq.net/ ...
written 7 days ago by Shaminur • 90
0
votes
0
answers
118
views
0
answers
Comment: C: Extracting amino acid positions from a fasta sequence
... I think, the position should be set according to the reference. Thank you. ...
written 8 days ago by Shaminur • 90
0
votes
3
answers
115
views
3
answers
Answer: A: Venn Diagrams with labels
... [This][1] might help, but needs some Photoshop work. [1]: http://bioinformatics.psb.ugent.be/webtools/Venn/ ...
written 10 days ago by Shaminur • 90
0
votes
3
answers
262
views
3
answers
Answer: A: Mapping illumina seq reads to bacterial reference genome.
... Hi, you can find some answer from [here][1] . Thank you [1]: https://www.researchgate.net/publication/343850856_Genome-wide_diversity_and_differentiation_of_two_novel_multidrug-resistant_populations_of_Pasteurella_multocida_type_B2_from_fowl_cholera?_sg=yaQOxGEpfsa15BTpeJXIurXjg-AvAN40cLAEo_iaZc ...
written 17 days ago by Shaminur • 90
0
votes
1
answer
116
views
1
answers
Comment: C: Problem with MAFFT Multiple Sequence Alignment
... Hi, Why not try with this version (https://mafft.cbrc.jp/alignment/software/closelyrelatedviralgenomes.html). you can find some information [here][1]. Thank you. [1]: https://onlinelibrary.wiley.com/doi/10.1111/tbed.13834 ...
written 29 days ago by Shaminur • 90
1
vote
1
answer
116
views
1
answers
Comment: A: Problem with MAFFT Multiple Sequence Alignment
... MAFFT online server (https://mafft.cbrc.jp/alignment/server/) is a very good option as an alternative. ...
written 29 days ago by Shaminur • 90
0
votes
1
answer
238
views
1
answers
Comment: A: Ramachandran plot analysis
... Thank you very much. I also find some answer [here][1] [1]: https://bioinformatics.stackexchange.com/questions/13343/where-can-i-visualize-ramachandran-plot ...
written 5 weeks ago by Shaminur • 90
3
votes
1
answer
238
views
1
answer
Ramachandran plot analysis
... Hi, Need suggession for analysis of Ramachandran plot. Server and/or tools. Thank you ...
protein rampage written 5 weeks ago by Shaminur • 90
0
votes
1
answer
140
views
1
answers
Comment: C: Error in genebank extractor python code
... Thank you very much Dlakic. It works now. But two output files are empty! output_handle1.write(">%s %s %s %s %s %s %s\n%s\n" % (ID, desc, product, locus, strand, start, end, nt_seq)) output_handle2.write(">%s %s %s %s %s %s %s\n%s\n" % (ID, desc, product, locus, strand, s ...
written 6 weeks ago by Shaminur • 90 • updated 6 weeks ago by _r_am ♦ 32k

Latest awards to Shaminur

Scholar 4 months ago, created an answer that has been accepted. For A: How to extract genome from iontorent bam file?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to extract genome from iontorent bam file?
Scholar 7 months ago, created an answer that has been accepted. For A: How to extract genome from iontorent bam file?
Supporter 8 months ago, voted at least 25 times.
Autobiographer 8 months ago, has more than 80 characters in the information field of the user's profile.
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1466 users visited in the last hour
_