User: Shaminur

gravatar for Shaminur
Shaminur90
Reputation:
90
Status:
Trusted
Location:
Dhaka University
Last seen:
8 hours ago
Joined:
1 year, 2 months ago
Email:
m*****************@gmail.com

BS Hon's and MS in Microbiology, Department of Microbiology, University of Dhaka.

Posts by Shaminur

<prev • 71 results • page 1 of 8 • next >
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Comment: C: How to make a complicated dot plot for scRNAseq marker genes with ggplot2?
... [harmony][1] also might help here. [1]: https://htmlpreview.github.io/?https://github.com/satijalab/seurat.wrappers/blob/master/docs/harmony.html ...
written 6 days ago by Shaminur90
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Comment: C: paired end metagenomics analysis
... [IDseq][1] is also a good option for taxonomic assignment. [1]: https://idseq.net/ ...
written 7 days ago by Shaminur90
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Comment: C: Extracting amino acid positions from a fasta sequence
... I think, the position should be set according to the reference. Thank you. ...
written 8 days ago by Shaminur90
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Answer: A: Venn Diagrams with labels
... [This][1] might help, but needs some Photoshop work. [1]: http://bioinformatics.psb.ugent.be/webtools/Venn/ ...
written 10 days ago by Shaminur90
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Answer: A: Mapping illumina seq reads to bacterial reference genome.
... Hi, you can find some answer from [here][1] . Thank you [1]: https://www.researchgate.net/publication/343850856_Genome-wide_diversity_and_differentiation_of_two_novel_multidrug-resistant_populations_of_Pasteurella_multocida_type_B2_from_fowl_cholera?_sg=yaQOxGEpfsa15BTpeJXIurXjg-AvAN40cLAEo_iaZc ...
written 17 days ago by Shaminur90
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Comment: C: Problem with MAFFT Multiple Sequence Alignment
... Hi, Why not try with this version (https://mafft.cbrc.jp/alignment/software/closelyrelatedviralgenomes.html). you can find some information [here][1]. Thank you. [1]: https://onlinelibrary.wiley.com/doi/10.1111/tbed.13834 ...
written 29 days ago by Shaminur90
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Comment: A: Problem with MAFFT Multiple Sequence Alignment
... MAFFT online server (https://mafft.cbrc.jp/alignment/server/) is a very good option as an alternative. ...
written 29 days ago by Shaminur90
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Comment: A: Ramachandran plot analysis
... Thank you very much. I also find some answer [here][1] [1]: https://bioinformatics.stackexchange.com/questions/13343/where-can-i-visualize-ramachandran-plot ...
written 5 weeks ago by Shaminur90
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Ramachandran plot analysis
... Hi, Need suggession for analysis of Ramachandran plot. Server and/or tools. Thank you ...
protein rampage written 5 weeks ago by Shaminur90
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Comment: C: Error in genebank extractor python code
... Thank you very much Dlakic. It works now. But two output files are empty! output_handle1.write(">%s %s %s %s %s %s %s\n%s\n" % (ID, desc, product, locus, strand, start, end, nt_seq)) output_handle2.write(">%s %s %s %s %s %s %s\n%s\n" % (ID, desc, product, locus, strand, s ...
written 6 weeks ago by Shaminur90 • updated 6 weeks ago by _r_am32k

Latest awards to Shaminur

Scholar 4 months ago, created an answer that has been accepted. For A: How to extract genome from iontorent bam file?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: How to extract genome from iontorent bam file?
Scholar 7 months ago, created an answer that has been accepted. For A: How to extract genome from iontorent bam file?
Supporter 8 months ago, voted at least 25 times.
Autobiographer 8 months ago, has more than 80 characters in the information field of the user's profile.

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