User: Bioinfo

gravatar for Bioinfo
Bioinfo20
Reputation:
20
Status:
New User
Location:
Morocco
Last seen:
1 month ago
Joined:
8 months, 3 weeks ago
Email:
m*******@gmail.com

Posts by Bioinfo

<prev • 96 results • page 1 of 10 • next >
0
votes
1
answer
124
views
1
answers
Comment: C: what is the parametrs i should take in consideration to choose the best assembly
... Thank you very much for your answer , and very sorry for late reply i used shovill for assembly ( it contains spades inside ) ahh also i have to mention that i used spades with specefic kmer ( the one gived by Unicycler ) so for each sequencing technic i have two assembly file : Default and kmerX( ...
written 3 months ago by Bioinfo20
0
votes
1
answer
124
views
1
answers
Comment: C: what is the parametrs i should take in consideration to choose the best assembly
... Hello Thank you for your reply , what do you mean by taking both miSeq and HiSeq is taking the mixed contigs file or taking the fileafter removing duplication ? ...
written 3 months ago by Bioinfo20
2
votes
1
answer
124
views
1
answer
what is the parametrs i should take in consideration to choose the best assembly
... Hello Biostar ! Please i have question i did sequencing of five strains with two datasets (Hiseq Data and Miseq Data ) so for each strain i have Hiseq contigs file and Miseq contigs file (and mixed Hiseq Miseq contigs file) for exemple let s say i have strain A , so i have Hiseq_A_R1.fastq Hiseq_ ...
assembly sequence alignment sequencing written 3 months ago by Bioinfo20 • updated 3 months ago by Michael Dondrup47k
0
votes
2
answers
96
views
2
answers
Comment: C: How to remove duplicated sequences without using any software
... Hello , thank you very much for your reply and your suggestions , and sorry for late reply Yes my principal aim was to improve assembly results for that i merged results of assembly (the contigs files ( because i had Hiseq data and Miseq Data) after that i removed duplicated sequences using cd-h ...
written 3 months ago by Bioinfo20
0
votes
2
answers
96
views
2
answers
Comment: C: How to remove duplicated sequences without using any software
... Ahh yes it works now , thank you :D ...
written 3 months ago by Bioinfo20
0
votes
2
answers
96
views
2
answers
Comment: C: How to remove duplicated sequences without using any software
... yes i already used it but it didn't work 0 duplicated records removed and i still get the same error msg in prokka ...
written 3 months ago by Bioinfo20
0
votes
1
answer
96
views
1
answer
How to determine the number of number of nucleotides
... Hello Biostar i hope you're doing well please how can i determine number of contigs that are higher than a size , ( i want to determine how many contigs that are higher than N50 ) Thank you ...
sequence assembly alignment sequencing written 3 months ago by Bioinfo20 • updated 3 months ago by Kevin Blighe63k
0
votes
0
answers
117
views
0
answers
How to download specefic gene of all speices strains
... Hello Biostar ! I hope you're doing well i want to create photogenic tree using 16 s of chlostridium difficile , for that i need to download all the 16 s gene of all the strains that below to chlostridium difficile , is there any command line i can use to do that , i tried ncbi-genome-download ...
genome assembly next-gen gene written 3 months ago by Bioinfo20
0
votes
1
answer
2.1k
views
1
answers
Comment: C: Minimap2 warning message
... Hello Please i want to know what that mean map-ont ?? ...
written 3 months ago by Bioinfo20
0
votes
1
answer
111
views
1
answers
Comment: C: Merging three assembly results and elimination of duplication
... Thank you for your reply ...
written 3 months ago by Bioinfo20

Latest awards to Bioinfo

Supporter 3 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1491 users visited in the last hour