User: mandar.bedse

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Posts by mandar.bedse

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Comment: C: SnpEff question for Variant annotation
... Yes, I want to convert the output from SNPEff to be converted into a tab-separated file? ...
written 17 hours ago by mandar.bedse0
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Comment: C: SnpEff question for Variant annotation
... Here is the example : DP=219;MQ=25.33;TLOD=44.88;FractionInformativeReads=0.530;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328.2|processed_transcript||n.*268G>A|||||268|,A|downstream_gene_variant|MODIFIER|MIR6859-1|ENSG00000278267|transcript|ENST000 ...
written 17 hours ago by mandar.bedse0 • updated 7 hours ago by finswimmer12k
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SnpEff question for Variant annotation
... I have a annotated my VCF using SnpEff and now I want to convert INFO column into different columns. Can anybody suggest any tool or command? ...
gene vcf next-gen snpeff written 18 hours ago by mandar.bedse0 • updated 18 hours ago by Pierre Lindenbaum124k
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SnpEff question for Variant annotation
... I want to annotate the variant predicted from GRCh38 build. Does SnpEFF use GRCh38? ...
snp written 2 days ago by mandar.bedse0 • updated 2 days ago by kanika.15180
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Variant Annotation and prioritization
... I have data of Whole Exome Data of Human with Pancreatic Cancer patient: I would like you to, 1. Annotate the variants 2. Prioritize variants on various parameters of importance 3. Extract Genotype information for the Non-Synonymous Variants. Could anybody suggest me the tools to achieve this o ...
next-gen sequence written 5 days ago by mandar.bedse0 • updated 5 days ago by Vitis2.3k
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Offtargeting in SureCall
... How to find if reads are offtargets and where are they aligned actually? I am using SureCall software. ...
alignment written 7 months ago by mandar.bedse0 • updated 7 months ago by lakhujanivijay4.5k
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Exome Seq tutorial
... Can anybody send me the tutorial for Exome-Seq? I am interested to learn the variant calling. ...
sequencing written 9 months ago by mandar.bedse0 • updated 8 months ago by Biostar ♦♦ 20
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Forum: Searching Project in bioinformatics
... I am interested to do bioinformatic project from home. Can anybody tell me where should I search the oppurtunity? ...
forum mytags project written 4.0 years ago by mandar.bedse0 • updated 4.0 years ago by Zhilong Jia1.5k

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Popular Question 4.0 years ago, created a question with more than 1,000 views. For Searching Project in bioinformatics

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