User: mandar.bedse

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Posts by mandar.bedse

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Comment: C: Amplicon seq and targeted seq
... Could you let me know on why this is irrelevant for this site? ...
written 10 months ago by mandar.bedse0
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(Closed) Amplicon seq and targeted seq
... What is the difference between amplicon sequencing and targeted sequencing? How to decide when to use either of them? ...
next-gen sequencing written 10 months ago by mandar.bedse0
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Comment: C: SnpEff question for Variant annotation
... Yes, I want to convert the output from SNPEff to be converted into a tab-separated file? ...
written 10 months ago by mandar.bedse0
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Comment: C: SnpEff question for Variant annotation
... Here is the example : DP=219;MQ=25.33;TLOD=44.88;FractionInformativeReads=0.530;ANN=A|downstream_gene_variant|MODIFIER|DDX11L1|ENSG00000223972|transcript|ENST00000456328.2|processed_transcript||n.*268G>A|||||268|,A|downstream_gene_variant|MODIFIER|MIR6859-1|ENSG00000278267|transcript|ENST000 ...
written 10 months ago by mandar.bedse0 • updated 10 months ago by finswimmer13k
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SnpEff question for Variant annotation
... I have a annotated my VCF using SnpEff and now I want to convert INFO column into different columns. Can anybody suggest any tool or command? ...
gene vcf next-gen snpeff written 10 months ago by mandar.bedse0 • updated 10 months ago by Pierre Lindenbaum130k
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SnpEff question for Variant annotation
... I want to annotate the variant predicted from GRCh38 build. Does SnpEFF use GRCh38? ...
snp written 10 months ago by mandar.bedse0 • updated 10 months ago by kanika.15180
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Variant Annotation and prioritization
... I have data of Whole Exome Data of Human with Pancreatic Cancer patient: I would like you to, 1. Annotate the variants 2. Prioritize variants on various parameters of importance 3. Extract Genotype information for the Non-Synonymous Variants. Could anybody suggest me the tools to achieve this o ...
next-gen sequence written 10 months ago by mandar.bedse0 • updated 10 months ago by Vitis2.4k
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Offtargeting in SureCall
... How to find if reads are offtargets and where are they aligned actually? I am using SureCall software. ...
alignment written 17 months ago by mandar.bedse0 • updated 17 months ago by lakhujanivijay5.2k
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Exome Seq tutorial
... Can anybody send me the tutorial for Exome-Seq? I am interested to learn the variant calling. ...
sequencing written 19 months ago by mandar.bedse0 • updated 18 months ago by Biostar ♦♦ 20
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Forum: Searching Project in bioinformatics
... I am interested to do bioinformatic project from home. Can anybody tell me where should I search the oppurtunity? ...
forum mytags project written 4.9 years ago by mandar.bedse0 • updated 4.9 years ago by Zhilong Jia1.6k

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Popular Question 4.9 years ago, created a question with more than 1,000 views. For Searching Project in bioinformatics

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