Moderator: h.mon

gravatar for h.mon
h.mon6.6k
Reputation:
6,570
Status:
Trusted
Location:
Brazil
Last seen:
an hour ago
Joined:
4 years, 8 months ago
Email:
h***********@gmail.com

about me

Posts by h.mon

<prev • 1,075 results • page 1 of 108 • next >
0
votes
1
answer
168
views
1
answers
Comment: C: Oxford University Press frustrations
... Thanks for the paper. It is probably just a technical problem, but it is a pain to find the proper channel to report the issue, and it takes weeks or months to get a reply or see the issue fixed. ...
written 10 hours ago by h.mon6.6k
0
votes
1
answer
183
views
1
answers
Comment: C: Where is the BigWig Supplementary Information?
... It seems the Supplementary Materials issue has been fixed site-wide at OUP. ...
written 10 hours ago by h.mon6.6k
0
votes
1
answer
77
views
1
answers
Answer: A: Problem with Trinotate runMe.sh script
... Trinotate module did load successfully, otherwise the error would be: > bash: runMe.sh: command not found or something similar. There are two `runMe.sh` on latest Trinotate (version 3.0.2), but they are just testing scripts. The Trinotate web page has detailed instructions on how to run Trinot ...
written 10 hours ago by h.mon6.6k
1
vote
0
answers
90
views
0
answers
Comment: C: MAFFT Alignment Algorithm
... I would say trustworthy enough, according to [here][1] and [here][2] (although this paper is now so old its benchmarks are probably meaningless for todays versions). It also depends on how similar your sequences are and size of dataset. [1]: http://mafft.cbrc.jp/alignment/software/eval/accuracy. ...
written 4 days ago by h.mon6.6k
0
votes
0
answers
120
views
0
answers
Comment: C: The same results with various dataset by cufflinks
... No, it is not normal. But as we can easily see from the command-line you provided, you run both times with the same dataset. ...
written 4 days ago by h.mon6.6k
0
votes
0
answers
124
views
0
answers
Comment: C: Streptococcus genome alignments
... By "pretty much the same thing" you mean only 30% of the reads map to the *de novo* assembly? ...
written 4 days ago by h.mon6.6k
0
votes
0
answers
124
views
0
answers
Comment: C: Streptococcus genome alignments
... what happens if you map your reads against you *de novo* assembly? ...
written 5 days ago by h.mon6.6k
0
votes
0
answers
104
views
0
answers
Comment: C: Functional annotation of SNPs and genes containing nonsynonymous SNPs
... For your second question, bedtools intersect can extract SNPs / indels intersecting you annotation, if you have it on bed or gff format. You can easily get gene length from the bed / gff as well. ...
written 5 days ago by h.mon6.6k
0
votes
0
answers
87
views
0
answers
Comment: C: Short sequence alignment with low alignment rate
... The results from (what I think is) the [original][1] paper are remarkably different: > We obtained a total of 43 million sequence reads from the seedling > libraries and 57 million reads from the callus libraries (Supplemental > Table S1). Approximately 70% of the reads were mapped to uniq ...
written 5 days ago by h.mon6.6k
0
votes
1
answer
323
views
1
answers
Comment: C: Why is Affymetrix computed sex different to that of plink?
... Which version(s) have the bug and which fixes it? ...
written 5 days ago by h.mon6.6k

Latest awards to h.mon

Teacher 9 days ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Scholar 10 days ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 15 days ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Oracle 16 days ago, created more than 1,000 posts (questions + answers + comments).
Scholar 18 days ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Commentator 20 days ago, created a comment with at least 3 up-votes. For C: RCurl instalation problem
Scholar 21 days ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Teacher 4 weeks ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Scholar 4 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 5 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 5 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 5 weeks ago, created an answer that has been accepted. For A: Extract fasta sequences from a large file using a list of names
Scholar 5 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Commentator 5 weeks ago, created a comment with at least 3 up-votes. For C: RCurl instalation problem
Scholar 6 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 7 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Scholar 9 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 10 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 10 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 11 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Scholar 11 weeks ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Teacher 11 weeks ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Commentator 12 weeks ago, created a comment with at least 3 up-votes. For C: RCurl instalation problem
Commentator 12 weeks ago, created a comment with at least 3 up-votes. For C: RCurl instalation problem

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 856 users visited in the last hour