Moderator: h.mon

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h.mon21k
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Posts by h.mon

<prev • 3,245 results • page 1 of 325 • next >
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Comment: C: mRNA / Protein Annotation questions - etiquette and consensus
... What is the species? Go to https://www.ncbi.nlm.nih.gov/ , then at the search box type the name of the species, select `Genome` database at the pull-down menu, and hit enter. ...
written just now by h.mon21k
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Answer: A: Samtools extraction output is empty
... `samtools faidx` doesn't take arguments from `stdin`, so you have to use a variable: samtools faidx Gene_db.fasta $(cat GH2_list.txt) > GH2_output.fasta ...
written 30 minutes ago by h.mon21k
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Comment: C: mRNA / Protein Annotation questions - etiquette and consensus
... Has the genome been incorporated into NCBI or Ensembl? If yes, there should be a better annotation available, compared to the authors original annotation ...
written 37 minutes ago by h.mon21k
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Comment: C: Cannot Generate Trimmomatic Output Files
... What is the content of "trimmomatic.po5224123"? Show us the output of: cat trimmomatic.po5224123 | head ...
written 6 hours ago by h.mon21k
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Answer: A: How to extract mapping features of multiple samples in one output?
... MultiQC doesn't extract information from the bam files, rather, it extracts from log files. Bowtie2 logs are output to stderr, you have to redirect them to a file and pass this file to MultiQC. ...
written 7 hours ago by h.mon21k
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Answer: C: Documentation on VCI files? Or convert VCI to VCF?
... I think VCI is a format from the g2gtools package. It is created from vcf files. Apparently, there is no documentation yet, but you may read the vcf2vci code to understand it. ...
written 18 hours ago by h.mon21k
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Comment: C: How can keep the change in my fastq file when i use grep and sed to edit it?
... And adding "ILLUMINA" to the headers will make markduplicate work? Are you referring to Picard MarkDuplicates? I thought it was supposed to work on bam files, not on fastq files. Did you ask the sequencing company **why** the headers are like this? Illumina headers follow a different naming convent ...
written 19 hours ago by h.mon21k
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Comment: C: Documentation on VCI files? Or convert VCI to VCF?
... Where did you obtain this file? What are the DO mouse lines? ...
written 19 hours ago by h.mon21k
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Comment: C: How can keep the change in my fastq file when i use grep and sed to edit it?
... Out of curiosity: **why** do you want to add "ILLUMINA" to every header? ...
written 19 hours ago by h.mon21k
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Comment: C: hmmsearch using genbank files
... Most (all?) bacterial genomes at NCBI have been annotated and proteins are available in a separate file, one file per genome sequenced. You can then easily run hmmsearch on each genome separately. If, for example, you go to [Assembly resources][1] page, and perform a search, you can then download s ...
written 1 day ago by h.mon21k

Latest awards to h.mon

Teacher 1 hour ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
Teacher 2 hours ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
Scholar 2 hours ago, created an answer that has been accepted. For C: Identify insertions with IGV
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Good Answer 4 days ago, created an answer that was upvoted at least 5 times. For A: Exporting data from Genevestigator
Teacher 5 days ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
Commentator 5 days ago, created a comment with at least 3 up-votes. For C: STAR align multiple files
Teacher 6 days ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
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Teacher 7 days ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Scholar 7 days ago, created an answer that has been accepted. For A: Script for extracting data from a tab-delimited file
Commentator 7 days ago, created a comment with at least 3 up-votes. For C: STAR align multiple files
Scholar 7 days ago, created an answer that has been accepted. For C: Identify insertions with IGV
Scholar 14 days ago, created an answer that has been accepted. For C: Identify insertions with IGV
Teacher 15 days ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
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Scholar 19 days ago, created an answer that has been accepted. For C: Identify insertions with IGV
Teacher 20 days ago, created an answer with at least 3 up-votes. For A: Hi blog how to calculate differntial expression analysis if thre is no replicate
Scholar 21 days ago, created an answer that has been accepted. For C: Identify insertions with IGV
Teacher 23 days ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV
Commentator 25 days ago, created a comment with at least 3 up-votes. For C: STAR align multiple files
Teacher 26 days ago, created an answer with at least 3 up-votes. For C: Identify insertions with IGV

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