User: eadele

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eadele0
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Mapping to duplicated region
... I am trying to map 150 PE Illumina reads to a mitochondrial genome, which contains a large tandem duplication (combined length = 9 kb). When aligning the duplicated regions against each other, there are just 94 SNPs between them. As a result of this similarity, reads are mis-mapping between the two. ...
duplication snp mitogenome heteroplasmy mismapping written 11 months ago by eadele0

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