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Posts by sujaypatil
... Thanks a tonne for the recommendation! I will keep in mind, the `salmon / kallisto + DESeq2 / edgeR` package stack in mind for future analyses. However, as part of a college assignment we've had to use the Tuxedo suite of tools for DE analysis, and so I've gone ahead and run the analysis using `cuff ...
... I have run ***cuffdiff*** (with statistics turned ON) to compare two groups of samples: *Control group* and *Late AD group*. This is the command I ran to be precise: cuffdiff -L Control,AD_Late_Braak -p 8 --total-hits-norm --frag-bias-correct ../References/ensembl.GRCh38.99.fa --multi-read-cor ...
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