User: palabari

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palabari10
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6 months ago
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Posts by palabari

<prev • 4 results • page 1 of 1 • next >
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Intersection of bigwig and bed files
... I have uploaded bigwig data from GEO to UCSC. I have a set of genomic regions of interest as bed and I would like to find out whether these regions intersect with ATAC-Seq peaks in the bigwig data. If I simply use the Table Browser intersection tool, I get regions with peaks that are very small, a ...
bed ucsc bigwig atac-seq peak calling written 6 months ago by palabari10
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Error with galGal6 genome
... I am trying to load the chicken genome to plot some genes on karyoploteR but it is not working. Any ideas why or how I could solve this? Thank you. kp <- plotKaryotype(genome="galGal6") [1] "galGal6" Loading ideogram... Error in normArgTrack(track, trackids) : Unknown track: cyt ...
R karyoploter written 6 months ago by palabari10
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Answer: C: How to map a set of genes on a circular representation of DNA ?
... you could also try: https://bioconductor.org/packages/release/bioc/vignettes/karyoploteR/inst/doc/karyoploteR.html ...
written 11 months ago by palabari10
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Get positions in original sequence file after alignment/trimming
... I would like to have suggestions into how I could solve this problem: I have downloaded several cDNA from Ensembl, such as: ENSG00000139618. I have aligned them with other proteins, trimmed unnecesary bits and deleted some regions. Then, I run these alignments in some other program and I get a lis ...
sequence ensembl alignment R strings written 11 months ago by palabari10 • updated 9 months ago by shenwei3565.6k

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