User: jav.cdp

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jav.cdp10
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Posts by jav.cdp

<prev • 8 results • page 1 of 1 • next >
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Comment: C: Generating A Gene Ontology Network For Cytoscape
... im working with Helicobacter pylori. There is no annotations. I need to relate my genes with de gene ontologies and with other data base, such Uniprot or KEGG, and see it in my network. ...
written 6.5 years ago by jav.cdp10
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Generating A Gene Ontology Network For Cytoscape
... Hello. I need help using cytoscape. I have a list of genes of interest that I use as input in STRING 9.0. Then I download a .xml file to use as network in Cytoscape. The next step is to import ontology and annotation to create a DAG. The problem here is the annotation file. I read the manual and I n ...
gene protein cytoscape ontology written 6.5 years ago by jav.cdp10 • updated 6.5 years ago by Leandro Lima920
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Comment: C: Gene Ontology Tree Programming
... I will try to write a better message. I write an algorithm that search information about all the crystallized proteins in PDB and save them. Also save information about GeneBank code, SwissProt code, and saves all. Among all this information, i obtained the gene ontology id for all the proteins. I s ...
written 6.6 years ago by jav.cdp10
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Input File For Ontology In Cytoscape
... How can i create a input file for cytoscape? im new on this so i need help, please. ...
cytoscape ontology written 6.6 years ago by jav.cdp10
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Gene Ontology Tree Programming
... I developed an algorithm that allows me to get information of crystallized proteins of a particular organism, and more. Among all this information, this algorithm gives me the gene ontology ids for the proteins found. My main target of research is finding potential therapeutic targets based on the a ...
gene ontology programming written 6.6 years ago by jav.cdp10
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Comment: C: Gene Ontology Programming
... I dont speak english, so there are some words that may be wrong. I developed an algorithm that allows me to get information of crystallized proteins of a particular organism. Among all this information gives me ontology ids for the proteins found. My main target of research is finding potential ther ...
written 6.6 years ago by jav.cdp10
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Comment: C: Gene Ontology Programming
... I have a lot of IDs.. like: GO:0043768 GO:0008152 I want to make a network between all this data of GO ids, and classify according to biological process, molecular function and cellular compartment. I tried using RamiGO, but it generates the entire tree with GO ids I do not want. I just want a t ...
written 6.6 years ago by jav.cdp10
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Gene Ontology Programming
... Hi. I would like to know how to work with a set of gene ontology terms that I have. I really need to know how can I make a graph or a conceptual map, with all my GO-terms obtained, and make all relation between them. I hope there is some tools with R programming or something. Thanks! ...
R visualization graph gene-ontology written 6.6 years ago by jav.cdp10 • updated 6.6 years ago by Khader Shameer18k

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