User: arianc

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arianc0
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Posts by arianc

<prev • 15 results • page 1 of 2 • next >
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Comment: C: macs3 peak calling usage
... I deleted the comments by mistake and I don't know how to restore them ...
written 10 days ago by arianc0
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Comment: C: macs3 peak calling usage
... I've deleted because I didn't want two with the same question but I will not do that again. According to your advise, when I type: 1. 14000000 - 14 peaks 2. 12631379 (number of nucleotides in the reference file) - 14 peaks. 3. 140000000 - 671 peaks MACS3 needs at least 100 paired peaks at + and - ...
written 10 days ago by arianc0
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Comment: C: macs3 peak calling usage
... Schizosaccharomyces pombe ...
written 11 days ago by arianc0
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Comment: C: macs3 peak calling usage
... I noticed that it is depend on -g parameter. How to determine the correct one? ...
written 11 days ago by arianc0
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Comment: C: macs3 peak calling usage
... I have checked in IGV, it has peaks ...
written 11 days ago by arianc0
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macs3 peak calling usage
... Hey! I am new in CHIP-seq analysis so please be understanding. I have got CHIP-seq data and I want to do simply regular peak calling. I am typing: macs3 callpeak -t A.bam -c input.bam -f BAM -g 483151142 -n A and I have got: #2 Total number of paired peaks: 0 Anyone know why? And this a ...
callpeak macs3 written 11 days ago by arianc0
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Comment: C: How to check size of genome?
... I want to know how to check number of base pairs in bam file ...
written 12 days ago by arianc0
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How to check size of genome?
... Hey! It is possible to check the size of genome (number of bp) in bam (or sam or fastq) file? Thanks in advance. ...
bam bp written 12 days ago by arianc0 • updated 12 days ago by Alex Reynolds31k
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Comment: C: bimodal distribution gc content
... The data is from CHIP-seq experiment ...
written 14 days ago by arianc0
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Comment: C: bimodal distribution gc content
... Why do you think it is mRNA? ...
written 14 days ago by arianc0

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