User: karthikqk95

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Posts by karthikqk95

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Metagenomics data analysis
... QIIME needs a mapping file to proceed with every step, what if i have trimmed reads doesn't know the Barcode as well as the Linker sequence which are essential to Qiime mapping file isn't it?? ...
written 6 months ago by karthikqk950
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Comment: C: kraken2-build command not found
... Actually i forgot that it was a script i just added "./" it executed simply ...
written 6 months ago by karthikqk950
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Comment: C: kraken2-build command not found
... Yeah i will after getting an idea how it works ...
written 6 months ago by karthikqk950
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Comment: A: How can we customize a SILVA reference database?
... How to extract silva.bacteria.fasta from silva reference files?? ...
written 6 months ago by karthikqk950
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kraken2-build command not found
... i tried building the database after installing kraken2, with this command kraken2-build --standard --threads 2 --db StandardDB/ it showed me an error Command 'kraken2-build' not found, did you mean: command 'kraken-build' from deb kraken What should i do the files kraken2 kraken2-build ...
kraken2 database metagenomics linux written 6 months ago by karthikqk950 • updated 6 months ago by onestop_data260
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How to produce a pdb file after introducing multiple point mutations?
... i have introduced a mutations in an protein sequence based on literature review. i have their FASTA files, i have tried mutagenesis tool in pymol to produce multiple point mutations, then i used the same file for GROMACS molecular dynamics simulations to study its stability i am facing errors, i hav ...
pdb gromacs mutation mdsimulation snp written 6 months ago by karthikqk950
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Barcode and Linker for QIIME2 analysis
... How to identify barcodes in a paired end fastq read retrieved for SRA database for metagenome analysis? ...
sra metagenome qiime2 metadata barcode written 6 months ago by karthikqk950

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