User: sahiilseth

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sahiilseth30
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New User
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United States
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3 years, 11 months ago
Joined:
7 years, 5 months ago
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Posts by sahiilseth

<prev • 6 results • page 1 of 1 • next >
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Answer: A: How to write effective and stable bioinformatics pipeline in R ?
... I do a lot of scripting in R, and with ggplot2 and bioconductor; there is so much one can achieve. Pipelining was surely a issue, so we built a tool to do just that (http://docs.flowr.space). One starts with a bunch of system commands, wraps them into a tab-delim text file. When done flowr can submi ...
written 4.5 years ago by sahiilseth30 • updated 4 months ago by RamRS26k
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common workflow language parser
... Is there a way to create a list of all commands which need to run as part of the pipeline? For example: cwl-parser hello.cwl would create a table like this: |jobname |cmd | |:----------|:--------------------------------------------- ...
latest hpcc cwl R sequencing written 4.5 years ago by sahiilseth30 • updated 4.1 years ago by Michael R. Crusoe1.8k
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Answer: A: Minimal CWL (Common Workflow Language) workflow from Makefile
... I do plan to create a CWL format importer for flowr in the future. Though, here is a example, using two simple tab-delim files. Feedback, really welcome ! Install flowr following these steps. You may edit this file, to run the same flow in various clusters, or local envir. vi simple_make.def Ad ...
written 4.5 years ago by sahiilseth30
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Comment: C: Installing Genome-Music-0.04
... A lot of steps, but this worked like a breeze !! ...
written 7.1 years ago by sahiilseth30
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Installing Genome-Music-0.04
... Hi: I am trying to install genome-music using a source package provided in one of the answers in this link: MuSIC source code Have installed several perl dependencies and now all seems done except: ! Genome (0.06) is installed, but we need version >= 0.08 And the interesting thing is that th ...
music written 7.3 years ago by sahiilseth30 • updated 7.2 years ago by Cyriac Kandoth5.5k
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Comment: C: Changing Quality Scores Within Bam Files
... Could you share this rescale_quals.py script? I am in a similar position. Thank! ...
written 7.4 years ago by sahiilseth30

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Popular Question 7.1 years ago, created a question with more than 1,000 views. For Installing Genome-Music-0.04

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