User: castravete2712

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Posts by castravete2712

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Comment: C: Struggling to work on a large Count Matrix
... Well, as it wasn't really important to say why I was needing it, I didn't mention it. But I need to find what I have to do in order to import this complex and large data in R because I need to analyze a large count Matrix issued of single-cell sequencing (split-seq if I want to be precise). The co ...
written 10 days ago by castravete27120
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Comment: C: Struggling to work on a large Count Matrix
... Yeah, sorry, I was indeed meaning to say to import or load data ...
written 12 days ago by castravete27120
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Comment: C: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... Okay, I didn't realize how much things can get tangled up. Thank you very much for the different advices, I'll be more careful ...
written 12 days ago by castravete27120
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Comment: C: Struggling to work on a large Count Matrix on Rstudio
... Yep, the RAM can't keep up. I was thinking of that but I can't manage to read the file directly into a sparseMatrix, avoiding the read.table step. read.matrix maybe? ...
written 12 days ago by castravete27120
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Struggling to work on a large Count Matrix
... Hello there, I'm struggling loading/importing my large count Matrix on Rstudio in order to analyze it. It's a quite medium sized data (3 Giga) but R is crashing every time and my PC want to seppuku itself each time. So, importing by only making a read.table won't work. I tried stocking it as a b ...
single-cell R countmatrix written 12 days ago by castravete27120 • updated 12 days ago by Jean-Karim Heriche21k
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Comment: C: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... Well, I installed R through conda. So you say that I have to install all packages for R through conda, the Rstudio (that I also installed with conda) package installation is not recommended even if R is installed through conda? ...
written 12 days ago by castravete27120
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Comment: C: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... I already encounter some problems with the conda version of the installation, it charges the monocle3 library but don't recognize functions from it, like newCellDataSet. ...
written 13 days ago by castravete27120
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Comment: C: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... Ah indeed, that could occur. I'll try again correcting the issues I have with the installation from source the. Thank you! ...
written 13 days ago by castravete27120
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Answer: A: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... Found a solution finally: Install it through conda, it works perfectly ...
written 13 days ago by castravete27120
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Comment: C: Does anyone manage to install Monocle3 on Rstudio 3.6.1 (on Debian 9)?
... Well, manually, I manage to install speedglm. I encounter now a new problem: configure: error: in `/tmp/RtmpDZcah8/R.INSTALL6eed630b38f3/units': configure: error: -------------------------------------------------------------------------------- Configuration failed because libud ...
written 13 days ago by castravete27120

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