User: biotech

gravatar for biotech
biotech540
Reputation:
540
Status:
Trusted
Location:
United States
Last seen:
2 weeks, 1 day ago
Joined:
7 years, 3 months ago
Email:
b******************@gmail.com

PhD in microbiology and computational biology.

Qualified pharmacist and biotechnologist, research mainly focused on bacteriology.

Specialties: Specialized in veterinary bacteriology and pathology. Interested in functional genomics and vaccines.

Currently looking for a nice job in bioinformatics.

 

Posts by biotech

<prev • 233 results • page 1 of 24 • next >
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Metilome data file example
... I need an example of metilome data. Could you point me some links to download some data? Thanks ...
metilome written 2.4 years ago by biotech540 • updated 2.4 years ago by Kevin Blighe54k
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Comment: C: openssl/hmac.h error while installing bedGraphToBigWig
... What are Kent utilities? ...
written 3.0 years ago by biotech540
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Comment: C: What second field zero means in sam file?
... I don't understand your answer Pierre. ...
written 3.0 years ago by biotech540
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IGV white read color meaning
... I know red means mapped to sense strand and that blue means mapped to antisense. What about white? ...
igv written 3.0 years ago by biotech540
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What second field zero means in sam file?
... Number_of_reads FLAG_bitwise_FLAG 153306 0 556844 16 I know 16 means 'read mapped in reverse strand' Does zero means read is unmapped? Can't in any assignment here for zero values https://broadinstitute.github.io/picard/explain-flags.html Here is one example: HISEQ-MFG:98:HHYW2B ...
sam written 3.0 years ago by biotech540
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Comment: C: seqlogo WebLogo difference
... It's curious an R program has been converted to run in the shell. For seqLogo, just can find the program instructions for R version. ...
written 3.0 years ago by biotech540
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seqlogo WebLogo difference
... I installed Weblogo via command line: brew install WebLogo But seems what has been installed is another program: ls /usr/local/Cellar/weblogo/2.8.2/bin seqlogo seqlogo is a Bioconductor package. Is it the same that the one I installed via brew? [https://www.bioconductor.org/packag ...
brew written 3.0 years ago by biotech540
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Comment: C: Difference between 'bedgraph' and 'bw' files
... Can I load 'bedgraph' and 'bw' files in IGV? ...
written 3.0 years ago by biotech540
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Difference between 'bedgraph' and 'bw' files
... Basically what is the difference between these two file formats? The bw is binary and the other not? ...
bedgraph bw written 3.0 years ago by biotech540 • updated 3.0 years ago by igor9.5k
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Comment: C: openssl/hmac.h error while installing bedGraphToBigWig
... What is http://hgdownload.cse.ucsc.edu? ...
written 3.0 years ago by biotech540

Latest awards to biotech

Popular Question 17 months ago, created a question with more than 1,000 views. For RNA-seq reads mapping to paralogs with high MAPQ. How to ensure this?
Great Question 17 months ago, created a question with more than 5,000 views. For R1 R2 orientation (RNA-seq)
Great Question 17 months ago, created a question with more than 5,000 views. For Get Galaxy Tool Shed Work On Local Instance
Popular Question 17 months ago, created a question with more than 1,000 views. For Align against reference genome and extract selected regions
Popular Question 17 months ago, created a question with more than 1,000 views. For 200 vs 400 bp Ion Torrent
Popular Question 17 months ago, created a question with more than 1,000 views. For Retrieve homologs of certain protein from large database
Popular Question 17 months ago, created a question with more than 1,000 views. For Create directed acyclic graph of enriched GO terms
Great Question 17 months ago, created a question with more than 5,000 views. For Is This A Valid Gff3 File For Htseq?
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Great Question 17 months ago, created a question with more than 5,000 views. For How to turn off low complexity filter in BLASTn?
Popular Question 17 months ago, created a question with more than 1,000 views. For Should I remove host RNA from host-pathogen metatranscriptomic data
Popular Question 17 months ago, created a question with more than 1,000 views. For Low number of reads mapped, looking for a relaxed paired-end Illumina mapper
Popular Question 17 months ago, created a question with more than 1,000 views. For R1 R2 orientation
Popular Question 17 months ago, created a question with more than 1,000 views. For Any Cog Enrichment Tools For Non-Model Organisms?
Popular Question 17 months ago, created a question with more than 1,000 views. For Too Many Deg With EdgeR Output?
Popular Question 17 months ago, created a question with more than 1,000 views. For RAMIGO gives an error when displaying GO terms
Popular Question 2.1 years ago, created a question with more than 1,000 views. For 200 vs 400 bp Ion Torrent
Popular Question 2.1 years ago, created a question with more than 1,000 views. For RAMIGO gives an error when displaying GO terms
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Create directed acyclic graph of enriched GO terms
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Retrieve homologs of certain protein from large database
Popular Question 2.1 years ago, created a question with more than 1,000 views. For About possible bias due to different experimental design
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Validation of OrthoMCL results
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Speed up BLASTp vs NCBI nr database
Popular Question 2.1 years ago, created a question with more than 1,000 views. For RNA-seq reads mapping to paralogs with high MAPQ. How to ensure this?

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