User: rachaelthomas

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Posts by rachaelthomas

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Comment: A: Understanding variants that PASS filter but are also flagged?
... Thanks- I can see how a given variant could fail for multiple reasons, but the part that doesn't make sense to me is the fact that these variants are ALSO annotated with 'PASS' i.e. in the above, example 'alt_allele_in_normal,clustered_events,t_lod_fstar,**PASS**,homologous_mapping_event,triallelic ...
written 28 days ago by rachaelthomas0
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Understanding variants that PASS filter but are also flagged?
... I'm working with some VCF files from a collaborator. In the FILTER column of any given VCF I'm used to seeing either PASS or some form of flag; however, in the files I'm looking at now, a reasonable proportion of variants are annotated PASS BUT also have one or more flags e.g. 'alt_allele_in_normal, ...
filtering written 29 days ago by rachaelthomas0

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