User: Suren

gravatar for Suren
Suren90
Reputation:
90
Status:
Trusted
Location:
Delhi
Website:
https://profiles.googl...
Last seen:
4 months, 1 week ago
Joined:
8 years, 10 months ago
Email:
s********@gmail.com

A bioinformatician.

Posts by Suren

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Reconstruct principal curves from the results of pathifier package
... Check [here][1] . They shared R codes to do exactly the same. You can also use the produced *RData files to extract the data for constructing the principal curve using [scatterplot3d][2] package. [1]: https://github.com/AngelCampos/Pathifier-Tool-Kit [2]: https://cran.r-project.org/web/packa ...
written 17 months ago by Suren90
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Comment: C: Rsem: Accurate Transcript Quantification From Rna-Seq Data With Or Without A Ref
... Nice. Thanks. This package seems interesting. Did you tried it on any dataset? ...
written 6.1 years ago by Suren90
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Comment: C: Normalization Method In Comparing Differential Gene Expression
... Thanks, very nicely explained ...
written 6.1 years ago by Suren90
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Comment: C: Analysing Microarray Data In Bioconductor
... Very useful. Thanks. ...
written 6.2 years ago by Suren90
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Answer: A: Blastclust Output Problem.
... If you can provide the problem in little detail, it would easy to suggest the solution. While running BLASTCLUST, If the sequence header is too long, it renames the header starting with Text like "Temp...." in the result file so make sure the header is not too long. I hope, you know that BLASTCLUST ...
written 7.8 years ago by Suren90
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Answer: A: Exon Sequences From Ncbi Ftp
... I dont know whether I understand your question correctly. Just a suggestion, if you have your files in GenBank format. You can parse them using some scripts. You can use e-utilities to download the data based on GI, AC etc. ...
written 7.8 years ago by Suren90
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Answer: A: Tree File For Codeml Program Of Paml
... 2NG.dN and 2NG.dS (distance matrices files) are dS and dN estimates (synonymous and non-synonymous) calculated automatically while using codeml. I think, such calculation do not need tree-file instead choose icode parameter for using correct codon-table for your sequences. Note: codeml and Yn00 both ...
written 8.1 years ago by Suren90

Latest awards to Suren

Scholar 17 months ago, created an answer that has been accepted. For A: Reconstruct principal curves from the results of pathifier package
Commentator 3.5 years ago, created a comment with at least 3 up-votes. For C: Analysing Microarray Data In Bioconductor
Voter 5.3 years ago, voted more than 100 times.
Supporter 5.3 years ago, voted at least 25 times.

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