User: asntech

gravatar for asntech
asntech30
Reputation:
30
Status:
New User
Location:
Norway/Oslo
Website:
https://asntech.github...
Twitter:
@khanaziz84
Last seen:
6 months, 3 weeks ago
Joined:
5 years, 11 months ago
Email:
a********@gmail.com

Posts by asntech

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Venn/Euler Diagram Of Four Or More Sets
... There is an interactive **[Shiny App][1]** and also [command line tool][2] to generate Venn diagrams and UpSet plots for multiple gene/name sets or genomic region sets. [1]: https://asntech.shinyapps.io/intervene/ [2]: http://intervene.readthedocs.io/en/latest/ ...
written 11 months ago by asntech30
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Answer: A: Extract motif ids of all transcription factors in human
... Hi, JASPAR now provide a REST API to get data from the latest release (2018) and also older releases of JASPAR. Here is the API http://jaspar.genereg.net/api/ and here is an interactive documentation http://jaspar.genereg.net/api/v1/docs You can also access JASPAR 2018 database by using R/Bioconduc ...
written 11 months ago by asntech30
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Answer: A: By using JASPAR API and PWMScan which tool is more accuracy to predict transcrip
... Hi, The bed files in JASPAR are the sites, which are used to construct the position frequency matrix (PFM), not the genome-wide TF binding sites. The 2018 release of JASPAR now provides predicted genome-wide TF binding sites (TFBSs) for several species as genome tracks and also bed files. More deta ...
written 11 months ago by asntech30
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Answer: A: Connect to JASPAR database with biopython
... Hi, JASPAR doesn't provide any public connection to the mysql server, but it provides the whole database as mysqldump. You can use it to setup a local mysql instance and query it using biopython. JASPAR now provide a REST API to get data from the latest release (2018) and also older releases of JAS ...
written 11 months ago by asntech30
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Comment: C: JASPAR motifs download
... We now provide a REST API to get data from the latest release (2018) and also older releases of JASPAR http://jaspar.genereg.net/api/. Here is example to get matrices for Homo sapiens http://jaspar.genereg.net/api/v1/species/9606/ ...
written 11 months ago by asntech30

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