User: asntech

gravatar for asntech
asntech50
Reputation:
50
Status:
New User
Location:
Norway/Oslo
Website:
https://asntech.github...
Twitter:
@khanaziz84
Last seen:
3 days, 13 hours ago
Joined:
6 years, 2 months ago
Email:
a********@gmail.com

Posts by asntech

<prev • 6 results • page 1 of 1 • next >
2
votes
2
answers
136
views
2
answers
Answer: A: coordinates of H3K27Ac
... Apart from ENCODE, you can also use Cistrome DB http://cistrome.org/db/ to search and download H3K27Ac peaks (in BED format) and signal tracks (bigWig format). If you're interested in regulatory regions, SCREEN has millions of candidate cis-regulatory regions defined by the combination of several hi ...
written 15 days ago by asntech50
0
votes
8
answers
33k
views
8
answers
Comment: C: Venn/Euler Diagram Of Four Or More Sets
... There is an interactive **[Shiny App][1]** and also [command line tool][2] to generate Venn diagrams and UpSet plots for multiple gene/name sets or genomic region sets. [1]: https://asntech.shinyapps.io/intervene/ [2]: http://intervene.readthedocs.io/en/latest/ ...
written 14 months ago by asntech50
2
votes
2
answers
700
views
2
answers
Answer: A: Extract motif ids of all transcription factors in human
... Hi, JASPAR now provide a REST API to get data from the latest release (2018) and also older releases of JASPAR. Here is the API http://jaspar.genereg.net/api/ and here is an interactive documentation http://jaspar.genereg.net/api/v1/docs You can also access JASPAR 2018 database by using R/Bioconduc ...
written 14 months ago by asntech50
0
votes
1
answer
2.2k
views
1
answers
Answer: A: By using JASPAR API and PWMScan which tool is more accuracy to predict transcrip
... Hi, The bed files in JASPAR are the sites, which are used to construct the position frequency matrix (PFM), not the genome-wide TF binding sites. The 2018 release of JASPAR now provides predicted genome-wide TF binding sites (TFBSs) for several species as genome tracks and also bed files. More deta ...
written 14 months ago by asntech50
0
votes
1
answer
944
views
1
answers
Answer: A: Connect to JASPAR database with biopython
... Hi, JASPAR doesn't provide any public connection to the mysql server, but it provides the whole database as mysqldump. You can use it to setup a local mysql instance and query it using biopython. JASPAR now provide a REST API to get data from the latest release (2018) and also older releases of JAS ...
written 14 months ago by asntech50
1
vote
0
answers
2.2k
views
0
answers
Comment: C: JASPAR motifs download
... We now provide a REST API to get data from the latest release (2018) and also older releases of JASPAR http://jaspar.genereg.net/api/. Here is example to get matrices for Homo sapiens http://jaspar.genereg.net/api/v1/species/9606/ ...
written 14 months ago by asntech50

Latest awards to asntech

Autobiographer 5.2 years ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1244 users visited in the last hour