User: parinv

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parinv10
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10
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New User
Location:
pune, India
Last seen:
1 day, 21 hours ago
Joined:
11 months, 3 weeks ago
Email:
p*******@gmail.com

Posts by parinv

<prev • 29 results • page 1 of 3 • next >
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Comment: C: build the expression matrix step by step from GEO raw data
... I am following this pipeline and I don't see any step to filter probes like in 1-colour (channel) data. so, do we filter probes in 2-colour (channel) data or not? Can you please clarify? Thankyou. Parin ...
written 2 days ago by parinv10
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Comment: C: Detection P-value in illumina data
... thank you so much Kevin for your help. ...
written 8 weeks ago by parinv10
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Comment: C: Detection P-value in illumina data
... Thankyou Kevin, I just have one last question. I Came across some papers, in which they filtered probes before background correction. Can you please explain if it is the correct way to filter probes and why should we background correct the data and then filter probes? ...
written 8 weeks ago by parinv10
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Comment: C: Detection P-value in illumina data
... After filtering the probes, should we remove the detection p-value columns or keep them for further analysis? ...
written 11 weeks ago by parinv10
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Comment: C: Detection P-value in illumina data
... yes, I found some questions related to illumina data but that did not clear my confusion regarding the detection P value. ...
written 11 weeks ago by parinv10
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Detection P-value in illumina data
... hello, I have started to work with an Illumina dataset [platform:-GPL10558-Illumina HumanHT-12 V4.0 expression beadchip]. I don't have any prior knowledge of Illumina data analysis. I imported my file to R-studio using lumiR function of the Lumi package but the data has some sample replicate and De ...
R illumina microarray data written 11 weeks ago by parinv10
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how to choose hub genes in wgcna
... hello, I am following [this tutorial][1] and calculated gene significance(GS) and inter-module connectivity of genes: module membership(MM). I came across some studies (example: [1][2], [2][3]) where they used GS and MM cutoff to choose hub genes. - can anyone suggest which method to use to selec ...
R wgcna written 3 months ago by parinv10
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Comment: C: network construction in cytoscape
... [this tutorial][1] wgcna tutorial by Peter Langfelder and Steve Horvath [1]: https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/ ...
written 3 months ago by parinv10
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network construction in cytoscape
... I followed the wgcna tutorial and got node and edge files for Cytoscape, I imported both the files to the Cytoscape software. Now, both these files are showing two different networks and I want to merge these files to construct one network. And also how to choose source and target options while impo ...
cytoscape written 3 months ago by parinv10 • updated 3 months ago by scooter410
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phenotype in meta analysis
... hello everyone, I have a doubt regarding the meta-analysis studies. what if a dataset included in a meta-analysis does not cover phenotypes compared to other datasets? how do we perform analysis with missing phenotypes? Is there any criterion to choose such datasets? Thank you Parin ...
R written 3 months ago by parinv10 • updated 3 months ago by lakhujanivijay5.4k

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